Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1888 ATGACTAGAAAGAAAGTGGAGCTTACATACATAGCCAATGAGTCAAAGAGGAAGGCAACATTGAAGAAAAGGAAAAATGGTTTGATAAAGAAAATTGATGAGATTAGCACCCTCTGTGGGATTGAAGCATGTGCTATAATTTATTCTCCAAATGATGAACTAGACGTTTGGCCATCCGAATTGGGAGTCCAAAGGGTGCTTTCTAGGTTCAAGAGCATGTCTGAACATGAACAAGGCAAAAAGATGTTGAATCAAGAGAGCTTCTTGAGCCAAAGCATCATCAAAGCCCAAGAGCAGTTGAAGAAACAAAAGAATGAAAACAGGAAGAAAGAGATGAGTAATCTCATGTTTGAATGCTTAAATACTGGGAAGATTTGTGACAATGCTAGCATGATAGATTTGAATGATCTTTCATGGTTAATTGATCAGAACCTAAAGGAAATTGAAAGGAACATGAGTAGGATGCAAATCCAAGAGGTGACACCAATAATTGAAAATGGAGGAGAAACCATGAATGGAGGACAACAGGTAAATATGGATAATGTCCAAGTGCCAGAGACCAACATGGATAACATGCAAAGGCAGCATTGGACCTCAGAATTTATCAATGGTGTAGTTGGGGACGACATGCTCCTACCATTTGGAGATGTTAATATCCAAAATGGCCTTTTTCCTAACCCATATATCCCTTGA 693 0.3867 MTRKKVELTYIANESKRKATLKKRKNGLIKKIDEISTLCGIEACAIIYSPNDELDVWPSELGVQRVLSRFKSMSEHEQGKKMLNQESFLSQSIIKAQEQLKKQKNENRKKEMSNLMFECLNTGKICDNASMIDLNDLSWLIDQNLKEIERNMSRMQIQEVTPIIENGGETMNGGQQVNMDNVQVPETNMDNMQRQHWTSEFINGVVGDDMLLPFGDVNIQNGLFPNPYIP* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1888 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr10g1888 230 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Apr10g1888 230 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Apr10g1888 230 PANTHER MADS BOX PROTEIN 2 160 - -
Apr10g1888 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr10g1888 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr10g1888 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr10g1888 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr10g1888 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr10g1888 230 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 160 - -
Apr10g1888 230 Coils Coil 93 114 - -
Apr10g1888 230 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1888 Apr-Chr10 31931922 31932758 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1888 1 152 Type I MADS-box Gene Family AT5G48670 54.248 6.97e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr10g1888 SRF-TF 7.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1888 - - gmx:100797590 249.595