Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1887 ATGACTAGAAAGAAGGTGGACCTTTCATACATAGCCAATGACTCGAAGAGGAAGGCGACCTTAAAAAAAAGGAAAAATGGTTTGATCAAGAAGATTGATGAAATTAGCACCCTTTGTGGGATTGAAGCATGTGCTATAATCTATACTCCAAATGATCCTCAGCCAGAGGTTTGGCCATCTGAATGGGAAGTCCATAGGGTTCTCTCTAAGTTCAAGAGAGTGCCTGAATTGGAGCAAAGCAAAAAAATGTTGAATCAAGAGAGCTTCTTGAGGCAAAGGATCATCAAAGCCCAAGAACAATTGAAGAAACAAAAGAGTGAAAATCGGAAGAAAGAGATGACCCAACTCATGTTTGAATACCTAACTGCTGGAAAGATTTTTGACAATGCTAGCATGATGGATCTGAATGATCTTTCATGCTTGATTGATCAAAACTTGAAGGAAATTGAAAGGAACATCAATGGTCAAGTCCAAGAGGTTGCACCAATGATTGAAAATGCAGGAGAAATCATGAATGTAGGAGAAGCCATGAATGTTGGAGAAACCATGAATGGGGGAGAACAAGCAGTACATATGAATCATGTCCAAGGGCTGGAGACTAATGTGGACGCCATGCACAAGCAAAATTGGGCTATGGACTTCATCAATGGTGGTGGGAGTGGGAGTGACATGCTACCATTTGGAGATGTTAATGCTCAAAATGGCTTTTGGGCTAACCCATATATCCCTTGA 732 0.4085 MTRKKVDLSYIANDSKRKATLKKRKNGLIKKIDEISTLCGIEACAIIYTPNDPQPEVWPSEWEVHRVLSKFKRVPELEQSKKMLNQESFLRQRIIKAQEQLKKQKSENRKKEMTQLMFEYLTAGKIFDNASMMDLNDLSCLIDQNLKEIERNINGQVQEVAPMIENAGEIMNVGEAMNVGETMNGGEQAVHMNHVQGLETNVDAMHKQNWAMDFINGGGSGSDMLPFGDVNAQNGFWANPYIP* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1887 243 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Apr10g1887 243 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Apr10g1887 243 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 160 - -
Apr10g1887 243 Coils Coil 87 116 - -
Apr10g1887 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Apr10g1887 243 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Apr10g1887 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr10g1887 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr10g1887 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr10g1887 243 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Apr10g1887 243 PANTHER MADS BOX PROTEIN 2 160 - -
Apr10g1887 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1887 Apr-Chr10 31923137 31924014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1887 1 186 Type I MADS-box Gene Family AT5G48670 49.462 3.72e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr10g1887 SRF-TF 7.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1887 - - gmx:100816084 285.034