Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1884 ATGGCACACCACAATTTTTCCATTGCTCTAATGATTCTCATTGTTCTCTTCATTATTAACATGAACCTTCAAGGTGCCAATGCTGATTATGGTGGTTGGGAGAGTGCTCATGCCACTTTCTATGGAGGGGGTGGAGCATGTGGGTATGGGAATTTATATAGCCAAGGTTATGGAACTGACACTGTTGCTCTAAGCACTGCTTTGTTCAACAATGGCTTAAGCTGTGGGTCTTGCTATGAAATGAGATGTGATGATGACCCAAGATGGTGCAAACCTGGCTCTATTACTGTTACTGCTACTAACTTCTGTCCACCAAACCCATCTTTGCCAAACAACAATGGTGGTTGGTGCAACCCTCCTTTGCAACACTTTGATATGGCTGAACCAGCATTTCTTCAAATTGCTGAATATAGAGCTGGAATTGTGCCTGTGGCCTTTAGAAGGGTGCCTTGTGTCAAAAAGGGAGGAATAAGGTTCACAATCAATGGCCACTCTTACTTCAACCTTGTTTTGGTCACCAATGTGGGTGGAGCTGGTGATGTCCATGCAGTGTCCATCAAAGGGTCTAAAACTGGGTGGCAACCCATGTCAAGAAACTGGGGGCAAAACTGGCAAAGCAACTCCTACCTCAATGGACAATCCCTCTCTTTTCAAGTTACCACAAGTGATGGTAGAACCGTGACAAGCTACAATGCAGCACCAGCCAATTGGCAGTTTGGCCAAACCTTCCAAGGTGGCCAATTTTAG 747 0.4511 MAHHNFSIALMILIVLFIINMNLQGANADYGGWESAHATFYGGGGACGYGNLYSQGYGTDTVALSTALFNNGLSCGSCYEMRCDDDPRWCKPGSITVTATNFCPPNPSLPNNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVSIKGSKTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVTSYNAAPANWQFGQTFQGGQF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1884 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Apr10g1884 248 Gene3D - 18 151 IPR036908 -
Apr10g1884 248 SUPERFAMILY Barwin-like endoglucanases 14 174 IPR036908 -
Apr10g1884 248 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Apr10g1884 248 SMART dpbb_1 61 146 IPR007112 -
Apr10g1884 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Apr10g1884 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Apr10g1884 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Apr10g1884 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Apr10g1884 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Apr10g1884 248 Gene3D - 155 248 IPR036749 -
Apr10g1884 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Apr10g1884 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Apr10g1884 248 PANTHER EXPANSIN 4 248 - -
Apr10g1884 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Apr10g1884 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Apr10g1884 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Apr10g1884 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Apr10g1884 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Apr10g1884 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Apr10g1884 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Apr10g1884 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Apr10g1884 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Apr10g1884 248 Pfam Lytic transglycolase 61 145 IPR009009 -
Apr10g1884 248 PANTHER EXPANSIN-A15 4 248 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1884 Apr-Chr10 31894917 31896774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1884 10 248 Expansin Gene Family AT2G40610 77.328 1.82e-142 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1884 - K20628 gmx:100777044 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1884 10 31894917 31896774 Apr9g1220 9 21745372 21747406 PCT