Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1873 ATGTATTTCAATAAAAAGAATAAGGATGATGATAAAGCTGAGCATCGTTATATGGAAACCGACCCAACTGGTCGATATGCCCGGGTTGGAGATATTCTTGGAAAAGGTGCAATGAAGACTGTGTATAAAGCAATTGATCGGGTCCTTGGAATAGAGGTAGCATGGAATCAGGTCAAGCTCAATGAGGCTCTTCGCAAACCGGAGGACTTGGAGCGGCTTTATTTAGAGGTTCATCTTCTCAGTACCCTCAAGCACCAATCCATAATGAGATTCTACACCTCTTGGATTGATGTTGAGAACAAGACCTTCAACTTCATTACAGAAATGTTTACTTCAGGGACACTGAGAGAATACAGGAAGAAATACAAGCACATAGGCGTACAAGCAATAAAGAGTTGGGCACGCCAAATCCTACAGGGTCTTGTTTATCTACACGAACATGATCCTCCAGTAATTCATAGGGACCTCAAATGTGATAACATATTTGTCAATGGCCATCTTGGACAAGTGAAAGTTGGTGACCTTGGTCTAGCAGCAATTCTCCATGGTTCACTGCCAGCCCACAGTGTTATAGGCACCCCCGAGTTCATGGCACCAGAATTGTATGAGGAAGAATACAATGAACTTGTTGATGTGTACTCATTTGGCATGTGTGTTTTAGAAATGCTTACATCTGATTATCCATATAGTGAATGTACTAACCCTGCGCAAATATACAAGAAAGTGACATCGGGGAAGCTACCAGCAGCACTTTTCCGGATTGAAGATGCAGAAGCACAAAAGTTTATTGGCAAATGTCTTGTAGCTGCATCAAAGAGACCATCAGCAAAAGAATTATTGCATGATCCATTTCTTGTGTCTGATGATGCAACATCTGTGTCAAGAATTGGAATTTTGAAACCATTTTTGAATTACAGTGAGATGGAAAAACTTCAACTGAGTGATGATTTAAGTAGGACTGAAATGTCAATAACTGGGAAGCTGAATCCGGATGATGATACTATCTTTCTCAAAGTGAAAATTTCTGAAAAGGATGGTTCTTGTAGGAATGTATATTTTCCATTTGACATTTACACAGACACTCCTATTGATGTTGCAATGGAGATGGTTAAAGAATTGGAGATCACAGATTTGGAGCCTTCTGATATTGCAAATATGATTGAAGGAGAGTTATCTGTGCTTCTGCCAAATAGGAGGAATAGTAACTATTCAGACACCTGCCATACATTTAGTTATCAAGATGATGATGAGGATGAAGGTCCACGTCATCATTTCCACTCTTTCTCTTCTTGTTCATCATCCCAAGAATCAATATCAGGTCCAGTCAATAGAGCTGATGACTTATCAAATGGATATTATTGGCTCCATGATGATATGCTTGATGATGCCAGTTCACGATGCTCTTCACATGGGACTTATTCCAACTTGAACTTTTGTTCAGTGGATGACCAAGAGCACAATGTGGCTTCTACAAGAAAAGATAAACATCCCATCATTAAGATTCACAAGTGTACAAGATTTTCTCCAGGGGAAGACCCCATCACTTTGAACCATTGCAAAGTTTTACCAGGACCACAAGCACCTTCAACTATTAAAAGGGTGATAGATAATCGTAGATTAACAAGGAACAAGTCACTAATTGACATGAGAAGCCAATTACTACACAGATCACTGGTTGAGGAAGTGAACAAAAGACGGTTATTCAAGACAGTAGGAGCTGTTGAAAACATTGGATTTCAGACACCTTATGAAGTTACCAACAAAAAACCACAGCCACTATGTGGTGCTTTTCAAGGAGTAGCAAGACAGAACTTAAGAGCTAAGAAAACTTAA 1833 0.3955 MYFNKKNKDDDKAEHRYMETDPTGRYARVGDILGKGAMKTVYKAIDRVLGIEVAWNQVKLNEALRKPEDLERLYLEVHLLSTLKHQSIMRFYTSWIDVENKTFNFITEMFTSGTLREYRKKYKHIGVQAIKSWARQILQGLVYLHEHDPPVIHRDLKCDNIFVNGHLGQVKVGDLGLAAILHGSLPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSDYPYSECTNPAQIYKKVTSGKLPAALFRIEDAEAQKFIGKCLVAASKRPSAKELLHDPFLVSDDATSVSRIGILKPFLNYSEMEKLQLSDDLSRTEMSITGKLNPDDDTIFLKVKISEKDGSCRNVYFPFDIYTDTPIDVAMEMVKELEITDLEPSDIANMIEGELSVLLPNRRNSNYSDTCHTFSYQDDDEDEGPRHHFHSFSSCSSSQESISGPVNRADDLSNGYYWLHDDMLDDASSRCSSHGTYSNLNFCSVDDQEHNVASTRKDKHPIIKIHKCTRFSPGEDPITLNHCKVLPGPQAPSTIKRVIDNRRLTRNKSLIDMRSQLLHRSLVEEVNKRRLFKTVGAVENIGFQTPYEVTNKKPQPLCGAFQGVARQNLRAKKT* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1873 610 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1873 610 Gene3D Transferase(Phosphotransferase) domain 1 110 293 - -
Apr10g1873 610 PANTHER WNK KINASE 23 594 - -
Apr10g1873 610 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Apr10g1873 610 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1873 610 CDD STKc_WNK 25 285 - -
Apr10g1873 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Apr10g1873 610 SUPERFAMILY Protein kinase-like (PK-like) 28 321 IPR011009 -
Apr10g1873 610 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1873 610 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 23 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1873 Apr-Chr10 31705077 31733953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1873 17 590 MAP Kinase Kinase Kinase AT5G58350 58.966 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Apr10g1873 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1873 K08867 - gmx:100778102 991.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1873 10 31705077 31733953 Apr9g1218 9 21717518 21722036 PCT