Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1863 ATGGAGATATCATTGTTAAAAATGATTGTTGATGGGATATCCTCATTTTTGCATATATCATTTTCTGGAAACATGAACACTGAACCTGTCTCAAAGTATTACTGCAAGGCAGAGGAGATACTTAAGTTATTGAAGCCAATTATTGATGCGATTGTTAATTCTGAGTTAGCTTCTGATGAAGTGCTTAATAAGATATTGGAAGAAATGGGTCATGCTGTTGATGAATTAAAGGATCATGTTGAGAACTGGCACCTATTGTCTAGCAAAGTGTACTTTGTTATGCAAGTTGAACCCCTAATATCAAGGATTCGCACTTCAGGGCTTAATATTTTCCAGCAGCTGAAGTCTTCTCAGCAATGTCTCCCCGATGAATTGAGTTCTGAACATTTACAGCTCTGTGCTCAAAAGCTTAAGCTTTTGGGACATGAAGAGACCTCATCAGTCATTAAGGAAGCTATTACAGAGCAAATGGAAAATGTAGGACCCAATTCAGAGGTCCTGGCAAAAATTGCTGATAGCCTGGGCCTAAGGTCTAATCAGGAGGTTCTAATTGAGGCTGTGGCTCTTGAAAGGTTGAAGGAGAATGCTGAACAAACTGAAAAGACTGCAGAAGCTGAATACATTGATCAAATGATTGCTGTTGTAACTCGTATGCATGAGCGTCTTGTTATGCTTAAGCAAGCCCAGAGTTCCAGCCCAGTTCCAATACCTGCTGATTTTTGTTGTCCTCTTTCGTTGGAGTTGATGACTGATCCTGTGATTGTGGCGTCAGGGCAAACATATGAGCGGACTTTTATCAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAGACTCTGGCTCACACAAATTTAATACCTAACTATACTGTAAAAGCACTAATTGCTAATTGGTGTGAAACAAACAATGTACAGCTGGTTGATCCCGCCAAATCCACAAATATAAATCAAGCATCTGTCCTTCATGGGTATATGGAATCTGGTACAACCAGAGAATCTCCTGTTTTTGCTCATTCCAGGAGCAACCAGCCATCCTCACCTGAGTCAGCTCGGTCTCGCTCTTTTAGTTCACCAGGTAATAACATAACGTCTGGTGGAATTCAGAGAGAGGGATCCTCACCATTGCATCCCCGTTCAACTTCAGAAGGTTCTTTAAGTGTTATGGTTAATGGGCAATATACAGATCCTGTAAGAATGTCACCTGCAGGTTTGGACGATAGGTCTGCTAGCTCAGATGAAAGCAGTGTGGATTCAGTTGGCCAACCATCAATGTCACCACCTAGAAAGGAATCGTCCAGTGCCATTAGCTCTGTACAATCTCAAACCCATAATAGAGCTGTTTCTGATTCCAGTGCACTTTGCACTGCTAATTTTCCTCAAGAAACACAAGGTGATGATGACAATGTTCCTCAGCTGTCAACAAGTCCAGGCCACAGTAGAGATGCTTCTGGTGAATTAAATCCAGGGCCAGAGACTGCTGGTGCTGCTGCCATACCATCTATGCATAGAGAACATGAGTTCCCACCCCGATTGATGGAGACAAGGTCCCGAAACCATGCCATATGGAGGAGGCCATCAGAGAGGCTTGTTCCTAGGATAGCATCTTCTCCTGCCATTGAAACAAGACCTGATCTTTCTGGTATTGAAAACCAGGTTCGGAATTTGGTTGAGGGCTTGAGGAGCTCTGATCTTGATACTCAGAGAGAGGCTACAGCAGAACTCCGCCTTCTTGCTAAGCACAATATGGATAATCGGATTGCAATTGCAAACTGTGGAGCCATTGTCTTATTAGTTGATTTACTTCGATCAACAGATATTAGGATCCAAGAAAATGCTGTTACTGCACTTCTCAACTTATCAATCAACGATAATAACAAAAGTGCAATTGCAAATGCTGGTGCAATTGATCCTCTGATTCATGTGCTTGAGACTGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCTGTGATTGAGGAAAACAAGATTATCATAGGGAGGTCAGGGGCAATTAGACCATTGGTGGATTTATTAGGAAATGGAACTCCTAGGGGAAAGAAAGATGCTGCTACTGCTTTATTTAATTTGTCAATATATCATGAAAATAAGGGTCGGATTGTGCAAGCTGGTGCTGTGAAGCACCTTGTGGAGTTAATGGATCCGGCAGCTGGAATGGTTGACAAAGCAGTGGCTGTCTTAGCAAATCTTGCCACAATTCCAGAAGGAAGAAATGCAATTGGTCAGGAAGGTGGGATTCCTGTTTTGGTTGAGGTTGTCGAGTTGGGTTCTGCCAGAGGAAAGGAAAATGCAGCAGCAGCTCTTCTGCATCTTTGCTTGCACAGTAACAGATTTTTAAGCATGGTGCTCCAACAAGGAGCTGTCCCACCATTAGTAGCATTATCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCAGACGCTCCTTAATCAATTTAGAAGTCAAAGACATGGGAATGGTGGGAGGGGCTGA 2520 0.431 MEISLLKMIVDGISSFLHISFSGNMNTEPVSKYYCKAEEILKLLKPIIDAIVNSELASDEVLNKILEEMGHAVDELKDHVENWHLLSSKVYFVMQVEPLISRIRTSGLNIFQQLKSSQQCLPDELSSEHLQLCAQKLKLLGHEETSSVIKEAITEQMENVGPNSEVLAKIADSLGLRSNQEVLIEAVALERLKENAEQTEKTAEAEYIDQMIAVVTRMHERLVMLKQAQSSSPVPIPADFCCPLSLELMTDPVIVASGQTYERTFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCETNNVQLVDPAKSTNINQASVLHGYMESGTTRESPVFAHSRSNQPSSPESARSRSFSSPGNNITSGGIQREGSSPLHPRSTSEGSLSVMVNGQYTDPVRMSPAGLDDRSASSDESSVDSVGQPSMSPPRKESSSAISSVQSQTHNRAVSDSSALCTANFPQETQGDDDNVPQLSTSPGHSRDASGELNPGPETAGAAAIPSMHREHEFPPRLMETRSRNHAIWRRPSERLVPRIASSPAIETRPDLSGIENQVRNLVEGLRSSDLDTQREATAELRLLAKHNMDNRIAIANCGAIVLLVDLLRSTDIRIQENAVTALLNLSINDNNKSAIANAGAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKIIIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIYHENKGRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSNRFLSMVLQQGAVPPLVALSQSGTPRAKEKAQTLLNQFRSQRHGNGGRG* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1863 839 MobiDBLite consensus disorder prediction 337 397 - -
Apr10g1863 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 678 720 IPR000225 GO:0005515
Apr10g1863 839 PANTHER U BOX DOMAIN-CONTAINING 9 835 - -
Apr10g1863 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 596 638 IPR000225 GO:0005515
Apr10g1863 839 SUPERFAMILY ARM repeat 555 828 IPR016024 -
Apr10g1863 839 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Apr10g1863 839 MobiDBLite consensus disorder prediction 411 485 - -
Apr10g1863 839 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Apr10g1863 839 Gene3D - 535 833 IPR011989 -
Apr10g1863 839 Coils Coil 179 209 - -
Apr10g1863 839 Pfam Armadillo/beta-catenin-like repeat 626 665 IPR000225 GO:0005515
Apr10g1863 839 Pfam Armadillo/beta-catenin-like repeat 587 624 IPR000225 GO:0005515
Apr10g1863 839 Pfam Armadillo/beta-catenin-like repeat 669 706 IPR000225 GO:0005515
Apr10g1863 839 SMART arm_5 667 707 IPR000225 GO:0005515
Apr10g1863 839 SMART arm_5 585 625 IPR000225 GO:0005515
Apr10g1863 839 SMART arm_5 708 747 IPR000225 GO:0005515
Apr10g1863 839 SMART arm_5 748 788 IPR000225 GO:0005515
Apr10g1863 839 SMART arm_5 626 666 IPR000225 GO:0005515
Apr10g1863 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 719 760 IPR000225 GO:0005515
Apr10g1863 839 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Apr10g1863 839 CDD RING-Ubox_PUB 240 282 IPR045210 -
Apr10g1863 839 SUPERFAMILY RING/U-box 226 313 - -
Apr10g1863 839 MobiDBLite consensus disorder prediction 337 516 - -
Apr10g1863 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 317 IPR013083 -
Apr10g1863 839 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 835 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1863 Apr-Chr10 31630494 31641312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1863 196 839 U-box Gene Family AT2G23140 63.158 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1863 - - gmx:100811250 1396.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1863 10 31630494 31641312 Apr9g1207 9 21612182 21617592 PCT