Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1848 ATGACCACTTCTTTCTCTGACCTGCTTTCATCTTCCACCGACCACAACCTGGGAGGCTCCGAAAGGCCTCACGTGTTGTCGGATAGAACAGGTTCTGGTGTCCCAAAATTCAAGTCTTCAACCCCTCCATCGCTCCCTCTCTCTTCTCCTCCTAATTCTCATCATTCTCTTCCTCCTGTTTCTCCTTCTTTCTTTAATATCCCTCCTGGGTTAAGCCTTGCTGAACTTCTTGACTCTCCGGTTCTCCTCAACTCGTCTAACGTTTTGCCATCTCCGACGACTGGAGCATTTGCTGGTCAAAGCTTCAATTGGAAGATCAGTTCTGGAGAAAGCCACCAAAATGTCAAAGAAGAAGACAAAAGCTTCTCAAGTTTCTCTTTCCAAACACAAGCACAACCTCCTGTTCCATCTTCAACTAGCACATCTCAAACAGGTTGGAGTTTTCAGGAAACAACTAAACATGATAGTTTTTCTTCAGGAATGAGTATGAGTACGGTGAAAACTGAAAACTCTTCTATGCAGAGTTTCATCCCTGAGAATAACCACAAGAGTGGTTTTCAATCAGATTATAACAGTTACCATCCACAGGCTCAGACCTTGAATAGAAAATCAGATGATGGGTACAACTGGAGGAAATATGGGCAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGCTACTACAAATGCACATACCCCAATTGCCCAACAAAGAAAAAGGTTGAAAGATCTTTGGATGGCCAAATCACTGAGATAGTTTACAAAGGTACTCATAACCATCCTAAGCCTCAGGCTACAAGGAGAAACTCATTGTCTACCTCATCACTTGCAATCCCTCATTCAAATCATGTCAGCACTGAAATACCAAATACCAATCATGGCAATGGACATATGGATTCAGTTGCCACCCCAGAAAACTCATCAATATCAGTGGGAGATGACGATTTTGATCATAGTAAATCAGGAGGAGATGAGTTTGATGATGATGAACCTGATGCCAAAAGATGGAAAATAGAAGGTGAAAATGAGGGTATATCAGCAGCAGGAAGTAGAACAGTGAAAGAACCCAGAGTTGTAGTTCAAACAACAAGTGACATTGATATTCTAGATGATGGGTATAGATGGAGGAAATATGGGCAGAAAGTTGTAAAGGGAAATCCAAATCCAAGGAGTTACTACAAGTGTACATACCCAGGATGTCCAGTGAGGAAGCATGTAGAGAGAGCCTCACATGACTTAAGGGCAGTGATCACAACCTATGAGGGAAAGCACAACCATGATGTGCCAGCAGCACGTGGAAGTGGCAACAATTCTATCAATAGACCAATGCCAAACAACACCATTAGTGCACCCCCTTCTATATACACTAACAATTCCATCAACAATTCTCTTCAGAATCTTAGAGCATCAGCACCAGAAGGGCAATCTCCCTTCAACCCTCAGATGCTGCAAAGCTCAAGAAGCTTTGGATTCCAAGGGTTTGGAAATCCAATGGAGTCTTACATGAATCAGCTATCTGACAATGTTTTTACTTCTAGAGCCAAGGAGGAGCCTGGAGATGATTCATTTCTTGAATCTTTGCTATGCTAA 1590 0.4226 MTTSFSDLLSSSTDHNLGGSERPHVLSDRTGSGVPKFKSSTPPSLPLSSPPNSHHSLPPVSPSFFNIPPGLSLAELLDSPVLLNSSNVLPSPTTGAFAGQSFNWKISSGESHQNVKEEDKSFSSFSFQTQAQPPVPSSTSTSQTGWSFQETTKHDSFSSGMSMSTVKTENSSMQSFIPENNHKSGFQSDYNSYHPQAQTLNRKSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQATRRNSLSTSSLAIPHSNHVSTEIPNTNHGNGHMDSVATPENSSISVGDDDFDHSKSGGDEFDDDEPDAKRWKIEGENEGISAAGSRTVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTYPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGNNSINRPMPNNTISAPPSIYTNNSINNSLQNLRASAPEGQSPFNPQMLQSSRSFGFQGFGNPMESYMNQLSDNVFTSRAKEEPGDDSFLESLLC* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1848 529 MobiDBLite consensus disorder prediction 1 62 - -
Apr10g1848 529 MobiDBLite consensus disorder prediction 120 178 - -
Apr10g1848 529 Gene3D WRKY domain 190 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr10g1848 529 ProSiteProfiles WRKY domain profile. 364 429 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g1848 529 MobiDBLite consensus disorder prediction 282 310 - -
Apr10g1848 529 SUPERFAMILY WRKY DNA-binding domain 203 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr10g1848 529 MobiDBLite consensus disorder prediction 109 178 - -
Apr10g1848 529 MobiDBLite consensus disorder prediction 1 18 - -
Apr10g1848 529 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 23 507 IPR044810 GO:0003700
Apr10g1848 529 SUPERFAMILY WRKY DNA-binding domain 361 429 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr10g1848 529 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 23 507 - -
Apr10g1848 529 MobiDBLite consensus disorder prediction 282 332 - -
Apr10g1848 529 MobiDBLite consensus disorder prediction 311 332 - -
Apr10g1848 529 SMART WRKY_cls 369 428 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g1848 529 SMART WRKY_cls 204 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g1848 529 MobiDBLite consensus disorder prediction 44 62 - -
Apr10g1848 529 Pfam WRKY DNA -binding domain 370 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g1848 529 Pfam WRKY DNA -binding domain 205 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g1848 529 ProSiteProfiles WRKY domain profile. 205 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g1848 529 Gene3D WRKY domain 356 422 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1848 Apr-Chr10 31527195 31530726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1848 1 528 WRKY Transcription Factor Family AT2G38470 45.374 3.32e-117 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr10g1848 WRKY 2.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1848 K13424 - gmx:100127385 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1848 10 31527195 31530726 Apr9g1186 9 21354654 21358006 PCT