Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1806 ATGGGTTCTTGGATAAGAGGGAAGTGTATAGGTAAGGGCGCGTTTGGCAGCGTTAGCATCGCGCTTCGCAAATTCGACGGTTTCCTGTTCGCGGTGAAGTCCGTGAATCTCAAAACGGGTCTCCCGGGTCAACTCGAAGCGTTAGAGAATGAGATTCGGATCCTCCAACGCATGTCCTCGCCGCACGTGGTGACTTTCCTTGGCGATGACGCCACGTGCGAGCACCGGAACCTCCACTTGGAGTACCTGCCAGGTGGCACACTTGCTGACGTGGATGGTGACATGGACGAGATTTTAGTAAGACACTACACGTGGTGCTTGGTGAGCGCTCTGCAACACGTGCACTCTAACAGCGTCGTTCACCGTGACGTGAAGGGGAAGAATGTCCTCGTCGGAGCCAGCGGCTGCAAGCTCGCCGACTTCGGATCGGCGGTGGAATTTTCCAGCGACGAGTTGCCGCCTGTGTCTCCGCGCGGGAGTCCTCTTTGGATGGCCCCGGAGGTGATTCGCGGGGAGTATCAGGGGCCGGAGTCTGACGTGTGGTCGCTGGGATGCACGCTGATCGAAATGCTCACAGGAAAACCGGCGTGGCAGGGAAACGCCGTTGACGCGCTGAGACGAATCGGTTACTCCGGCGAGTTGCCGGCGTTTCCGACTAGGTTGTCTGAACTCGGCCGGGATTTCCTAGAGAAGTGTCTGAGAAGGGAACCACGCCGGCGGTGGAGCTGCGATCAGCTGCTGCAGCATCCATTTTTGTTGCCGTGTTCCGCCAGCGAAGTCGTGGAATCGTCGCCTCGGTGTGTTCTCGACCGAGTTGACTCAGAGTTTGCCGAGTTCGAAGAAGAAGAAGAAACGAGAACTGAAACTGAAAATTCAGCTAGGGATAGAATTGGTAAATTGGCAATGAGCGTTAGGGCAAATTGGGAAACACAAGGCTGGATGGCGGTGAGGGCAATGGCTTTTGCCGCGGAATCGACGGTGGCAGTTGAGGGTTCTGAGGGCGTTAGAGAAGGGACATATTGGGAAAATTCAACGATCACGAGGGTAGAACAGGAAATTAATAAAGGGGCAAATTCGGAATATTCATATTCCGAAAAAAAAAGGGTAAATTTGGAAACATGTAATTTGGTGCAGTGGCGAGATGAAGGCGAGAGTGAGTGGAACCGCAAAGAAAGTGTAGCTGGTTGGAGCTGTAGTTATGGGTGGGAAAATGTGGATAGGAATAACGGAATAATGAAATTGAAATGGAGCATTGGGATATGGGACGATGAATTGGATGAGGTTGTGATCTTTGCTGGGCTTAACATAATGCACACCTGA 1320 0.5288 MGSWIRGKCIGKGAFGSVSIALRKFDGFLFAVKSVNLKTGLPGQLEALENEIRILQRMSSPHVVTFLGDDATCEHRNLHLEYLPGGTLADVDGDMDEILVRHYTWCLVSALQHVHSNSVVHRDVKGKNVLVGASGCKLADFGSAVEFSSDELPPVSPRGSPLWMAPEVIRGEYQGPESDVWSLGCTLIEMLTGKPAWQGNAVDALRRIGYSGELPAFPTRLSELGRDFLEKCLRREPRRRWSCDQLLQHPFLLPCSASEVVESSPRCVLDRVDSEFAEFEEEEETRTETENSARDRIGKLAMSVRANWETQGWMAVRAMAFAAESTVAVEGSEGVREGTYWENSTITRVEQEINKGANSEYSYSEKKRVNLETCNLVQWRDEGESEWNRKESVAGWSCSYGWENVDRNNGIMKLKWSIGIWDDELDEVVIFAGLNIMHT* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1806 439 Pfam Protein kinase domain 7 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1806 439 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Apr10g1806 439 ProSiteProfiles Protein kinase domain profile. 4 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1806 439 Gene3D Transferase(Phosphotransferase) domain 1 1 323 - -
Apr10g1806 439 CDD STKc_MAPKKK 3 252 - -
Apr10g1806 439 SMART serkin_6 4 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1806 439 SUPERFAMILY Protein kinase-like (PK-like) 2 273 IPR011009 -
Apr10g1806 439 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 3 348 - -
Apr10g1806 439 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 348 - -
Apr10g1806 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1806 Apr-Chr10 31113726 31115309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1806 4 362 MAP Kinase Kinase Kinase AT2G30040 58.808 3.97e-129 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Apr10g1806 Pkinase 2.7e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1806 - - gmx:100818366 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1806 10 31113726 31115309 Apr9g1138 9 20767060 20768603 PCT