Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1802 ATGGAGGGCATTGGTACATTGCTGATTTTTTTTGTTTATCTGAAATTGTCATCTATAGAAATTGAAGAGGTTTTGGAAAATTTTCAGGTGAGGAGTGAAGAGGAGGGCTTGCTTGGATCATGGCACGCAGGGACAGTTATCCATTGTGGGAAGCTGAAACGCTATATCAGATATACGAATATTTTGGAGAATAATAGGTTAAATTATCTTGTGGACGTGGTGAATGTTCCAAAAGCTTTGGACGGAGAAATTGAATCTTCATATTGCTACAAGCGTAGCTTCATTAGGCCAATGCCTCCTTTGGTTGATTTTGGGAGATTGGATCTTAAATTTGGTCTGTGTGTTGATGTGATCCAGCGGGAAGCTTGGTGGGAAGGTGTCATATTTGATCACTGCGATGGAATGGAAACAAGGAGTGTGTTTTTCCCTGATTTGGGAGATGAATTGCAAATTGAAATTCATCAATTGCGGATTACTCAGGACTGGGATGAAGTTACAGGAGAGTGGGAGCAACGAGGGAACTGGGTGCTTCTTGAATTGATTGAGGAGTGTGAGAGGGAATCTCTTGTTGCAATTTCAGCTAAACAAATTTGGTATGATGTACAGGGGAAAGAGGAATTTTGTATGATTGGAGATTGGACATATAATGTGAAGTACTTGTGGAAAAACTTGGTGAGGGAGGTAGTAAATGATTACTTAAAACTCACAGTAAAAGATGCTATCTCAGTCTTAAATCTTCCAGGGAGTTCACAAGAGCTGAATTCAGATGAAGCTATGGCTAATGTTGACTTCAACATGACCTTGACAGATGAGGAAATTGTTGTGCAGAAGGAACCTGCTCCTCCTAATTCAGGTGCTAGTTGTTTTGGAAGAAAAAGAAAACCTAGATCCCCAACCCATTTAAGGTCCACATACTGGACACCTCTGGAGTTTTCTGAAGTTGAATTATGTCCTGACGCTGTTAGGCAATATGCACTTGGTTCAAGTAGGACAAGTAGGAAACTTTGGAAGGAAAGACTACAAAAGCATCTTGCATATCTTGGATGGGAAATTGAGTGGTCAAATAGATTTAATATCAAACGTTACAGGTATAAATTGCCTGATGAACTGGGCCAAAAGGTTTACTTGTCACTAGTTGAAGTTTGTAAAAGTATGCTAGAGGACCCCAACAAGAACAACTCTTTGCAGTCTCAAAAGAGTAGAATGCATCTTACAATTGACTCTCATCTTTCAAATGTAGTTCCTAATCCATCCCAAAAAAATCAGGATCTTAATATCCTTCCTCCTGATGATGTCAAACCAGAGTTTTATCCTCAAGCTATTGTAGAATATTATCATGCACATCAATCCAACAAGAATAAGGCTGATAAAAAAAAGTGGATACTGAAAGCAAAGAATCACCTGTTAGCAGAAGGATGGAGTTTCGACTATCCACCTCCAACTAATAAGAAAAGGGGAATAAGATACATGTCTCCACAAAATAAGAGATTCACAACACTCCATGCAGCATGTAGATTTTGTATTGAAGAGGGTATTCCTGAATGGGCTATATCTGATATGCAGCCTTCAAATGTCTCTAGCACTAATGAGGAAAATGTTGATCAGGTTTGGAGCGGGGAATTATCACATAGAGTATCCCAATTTCTTCCAAAAGACCCTGAGTTACATGCTATGGATGGTGCTGCTGCAAATAGATCAACTTCAAATCGAAAGAGGAAATACTTGAGGAATTCAGAATCCAATCTACCTAATTGTCAAAGCAATGGATTGCCTCTAAGGATGCTAAGATCAAATAAGAGGGTTCAAAATATGTCTGCCCCTTGTTCATCACAACATAAACCTCTAAATGTTATGTCTTGGTTGATAGACTGCAACATGGTCTTACCAAGGTCTAAGGTTTATTACAAGGCAAAAGGAAGGCAACGTACTATTCGTACTATGGCTGTAGGGAAAATAACTCGCGATGGAATCAAGTGTAACTGTTGCATGAAAATATACAGTCTTGTTGGCTTTGAACATCATGCTAGTGGCATTAGTACTTGCAGGCCCTCTTCTAGTATCTTTTTGGAAGATGGTAGATCACTCTTGCATTGTCAAATGCAAATAATGCAAGATCATAAAACAAGCCAAACTAGTGAAAAACCATTCAGTGAGTTGTGTCAAGGAGACAATGACTACATTTGTTCTGTTTGCCACAATGGTGGTGAACTTATTTTATGTGATCAATGTCCATCTTCATTCCATAAGATGTGCCTTGGTTTGAAGGATGTCCCTGATGGTGATTGGTTTTGTCCATCATGTTGTTGTGGGATTTGTGGCCAAAACAAAATCCATAAAGATGAGGATGAACATTTCCTTACTTGTGCTCAGTGTGAACATAAATATCATGTTAGGTGCCTTAATAATGGAGCTGCAGATATATCAAGATATTGGAAAACTTGGTTCTGTGGAAAAGATTGTGAAAAGATATATGAAGGCCTTCATAAACTACTAGGAGCTCCAGTTTCAGTGGGTGTGGACAATCTAACATGGACATTGGTGAAGTTCATCAACTCTGAGAGTTGTGATCTTGGTGGTACTGAACATGACTTAGCGGCAGAAAGTTTTAGCAAACTCAATCTTGCTCTATCTCTGATGCATGAATGTTTTGAGCCCCTAAAGGAACCTTTCTCTAGCAAAGATCTCATGGAAGATGTTATGCTCAGCAGTTGGTCAGAGCTTAACCGATTAAATTTCCAGGGTTTCTATACTGTGTTACTTGAGAGAAATGAAGAACTAATTAGTGTGGCAATTATTAGGGTCTATGGGAGGAAGGTAGCAGAAGTACCCCTTGTTGGTACCAGATTACAGTATCGTCGACATGGAATGTGTCGCATTTTAATGAATGAGCTTGAAAAGAAGCTCATGCAATTAGGTGTGGAGAGGCTTGTTTTGCCTGCTATTCCTAGCGTGCTAGAAACATGTACCAGATCTTTTGGCTTTGCAAAGATGACAAGTTTTGAGAGATCTCGATTTCTGGACTACACTTTCTTAGATTTTCAGGGTACCATCATGTGCCAGAAGCTGTTGATGAAGATTCAATCTCCAGATTCCGTTTGTTTAATAGATTCACAACAAAAATGTGTTGTTTTCTCCGGAAGTTGCAGTGCTTACCCCGATAAGTCTAGTCAAATGTCCGAAGTATACCAGGAAGAGGAGATAAACAAAGGAGGCATGCTGGACCAACAAATGGGAAGTGGTCATCATGTTTATGGTGCTATTGACCCCATCACCATGGAGGAGCAACCAAGTCCTAGAGATCAACAGTGCCAGAATGGAACCAGCTCACAGTACTCTCTTGTAAACCAAGCAGGTAACAGGTATAATGGCTTGTATAAATATTACAACAGAAGGAAAGTGAGAAAAACATGTGAAGGGTTTAGAATGTCATTATTGGAGGGAAGTAAATTAGTAAGCACAGGGAAGATGATTAATTCTTCATCAGTTTTTGTGTACAAAGGAAGAATAGTAGCATAA 3516 0.3933 MEGIGTLLIFFVYLKLSSIEIEEVLENFQVRSEEEGLLGSWHAGTVIHCGKLKRYIRYTNILENNRLNYLVDVVNVPKALDGEIESSYCYKRSFIRPMPPLVDFGRLDLKFGLCVDVIQREAWWEGVIFDHCDGMETRSVFFPDLGDELQIEIHQLRITQDWDEVTGEWEQRGNWVLLELIEECERESLVAISAKQIWYDVQGKEEFCMIGDWTYNVKYLWKNLVREVVNDYLKLTVKDAISVLNLPGSSQELNSDEAMANVDFNMTLTDEEIVVQKEPAPPNSGASCFGRKRKPRSPTHLRSTYWTPLEFSEVELCPDAVRQYALGSSRTSRKLWKERLQKHLAYLGWEIEWSNRFNIKRYRYKLPDELGQKVYLSLVEVCKSMLEDPNKNNSLQSQKSRMHLTIDSHLSNVVPNPSQKNQDLNILPPDDVKPEFYPQAIVEYYHAHQSNKNKADKKKWILKAKNHLLAEGWSFDYPPPTNKKRGIRYMSPQNKRFTTLHAACRFCIEEGIPEWAISDMQPSNVSSTNEENVDQVWSGELSHRVSQFLPKDPELHAMDGAAANRSTSNRKRKYLRNSESNLPNCQSNGLPLRMLRSNKRVQNMSAPCSSQHKPLNVMSWLIDCNMVLPRSKVYYKAKGRQRTIRTMAVGKITRDGIKCNCCMKIYSLVGFEHHASGISTCRPSSSIFLEDGRSLLHCQMQIMQDHKTSQTSEKPFSELCQGDNDYICSVCHNGGELILCDQCPSSFHKMCLGLKDVPDGDWFCPSCCCGICGQNKIHKDEDEHFLTCAQCEHKYHVRCLNNGAADISRYWKTWFCGKDCEKIYEGLHKLLGAPVSVGVDNLTWTLVKFINSESCDLGGTEHDLAAESFSKLNLALSLMHECFEPLKEPFSSKDLMEDVMLSSWSELNRLNFQGFYTVLLERNEELISVAIIRVYGRKVAEVPLVGTRLQYRRHGMCRILMNELEKKLMQLGVERLVLPAIPSVLETCTRSFGFAKMTSFERSRFLDYTFLDFQGTIMCQKLLMKIQSPDSVCLIDSQQKCVVFSGSCSAYPDKSSQMSEVYQEEEINKGGMLDQQMGSGHHVYGAIDPITMEEQPSPRDQQCQNGTSSQYSLVNQAGNRYNGLYKYYNRRKVRKTCEGFRMSLLEGSKLVSTGKMINSSSVFVYKGRIVA* 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1802 1171 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 284 1076 - -
Apr10g1802 1171 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 27 252 - -
Apr10g1802 1171 PANTHER PHD ZINC FINGER PROTEIN 27 252 - -
Apr10g1802 1171 PANTHER PHD ZINC FINGER PROTEIN 284 1076 - -
Apr10g1802 1171 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 875 1002 IPR016181 -
Apr10g1802 1171 SMART agenet_At_2 107 164 IPR014002 -
Apr10g1802 1171 CDD NAT_SF 918 978 - -
Apr10g1802 1171 SUPERFAMILY FYVE/PHD zinc finger 710 767 IPR011011 -
Apr10g1802 1171 Pfam Tify domain binding domain 650 701 IPR032308 -
Apr10g1802 1171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 719 768 IPR013083 -
Apr10g1802 1171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 769 823 IPR013083 -
Apr10g1802 1171 Gene3D - 875 1011 - -
Apr10g1802 1171 SMART ring_2 728 767 IPR001841 -
Apr10g1802 1171 SMART ring_2 769 819 IPR001841 -
Apr10g1802 1171 SMART PHD_3 769 821 IPR001965 -
Apr10g1802 1171 SMART PHD_3 727 768 IPR001965 -
Apr10g1802 1171 Pfam Agenet domain 30 100 IPR008395 -
Apr10g1802 1171 ProSiteProfiles Zinc finger PHD-type profile. 725 770 IPR019787 -
Apr10g1802 1171 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 860 1023 IPR000182 GO:0016407
Apr10g1802 1171 Pfam PHD-finger 727 768 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1802 Apr-Chr10 31057481 31063602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1802 593 966 PHD Transcription Factor Family AT5G58610 50.656 7.84e-121 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr10g1802 Agenet 2.2e-08 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1802 - - aprc:113851199 2416.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1802 10 31057481 31063602 Apr9g1134 9 20692848 20698825 PCT