LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g1797	ATGCCAATCAACCATTCCCCGCCACCGCCCTCCACTGTCTACTCCATCCGCCGCTCCCTCTCCGACATCCGCACTCCGCCGCCCGACCACCGCCCCTTTGACAACCCCCGCCGCTTCACTGCCTTCGCCCACCGCCTCTCCCACCTCCTCCTCCTCCCGCTTCCGCACTCTCCGCCCGTTAACACCGCCCTCACGGGAATCTCCGGCGAGCTCTCCAAGGCCTCCGAAACCGTCTCCGTCTACAACAATGGTAGCAAAATTCTGGTTCTCATTAACTGCAAATCACTCTGTTCCTCTCTCCAAGATCGCTCCGTCTCCATCGGCGGCTGGCTCTCCCTCCTCGCCTCCGCTCTCCCCGATGCCGACGACGACGACCTCCGCAAGAAGGTTTCCGATCTCTCCAGAGACATGAAGCTCGTGCAGTTCAGAGTCACAGAGAACGAAGAGAGAGTTTGGTGCACGCTGGAGAAGGAAGGGGAAGGGAGAGAGACTAGTAAAGTGGTGCAGAGTGGCATTGTCATGGATTTGGCTCGTGCTTTGGGGTTTGACCCTGGTGATCATGCTGAGTTTTGTAACCAGGTGAAGTTCTTCAAGGATGATCCTTTTAGATCCAATTCGGTGTCAGAGAGAAGGATTTTGTTGTTCTTAGAGAGGATTCTTAGTAACTGGTCTGCGGAGCCTGCCACTGTGACCCCCAATTGGGACTTTGAAATTGTTGAAGATGATGTTGTTGCTCCTGTTTTTCCATTTAAGAGTTTCCTCTGCCCCTTGACCAAGGAAGTCATGAGGGACCCTGTGGTTGTTATGGAATCCTTTCAGAGCTATGAAAGGACTGCCATTGAATACTGGTTTGATCAGTGTATCCAGGATGGCCGAGATCCCACTTGTCCGGTTACCGGAGCTGTTCTTAAGTCCTTGGAGCTGAAGCCCAACATTGGGTTGGCTGGGGCAATTGAAGAGTGGGTTGGCAGGGTTGTTGAGCATCAAATCAAATCTGCAGTGGTGTATCTGAGTGAGGAACCCTTGTCTGTTGATCATGTTGAGTGTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCACCCCAGTAGCAGATATGTAATCAGGAATGCTGGTGTTGTGCTGTTAATAGTGACTGTGCTCAGTAATAATTCTAAAACTATTGGATCGCGTTTGAGAAGCAAAGCTCTAATGACGTTACTTAGTATGGCCAAAGATGAAGAAAGCAGGAAAATAATGCTTGCACGAGGCATCACTAAATTGGCTGTAAATAGTCTTATTGGGAGCTCTGAGAAGGAGAGAGAATATGCTGTCAAGTTATTACTAGAATTCTGCAGTGACGAAGATTGTTGCATAAGAATTGCATCAGAAAAAGGTGCATTAGTTCTTCTCTCAAGCATAGCAGGAAATCTGGAGTATCCATCCTTGTCCAATTTAGCTGAGGAAGTCTTAAGGCAGATGGAGAGGGTAGAGGATAATGTTCATTGTTTGGCAGCAGCTGGAAGATTTGAACCATTAATTTCACGGTTACATGATAGTTCTGATAGTGTAAAGATAGAGATGGCTTCTCTGGTGGGAAGGATGACCTTGACAAATAGTTGTAAAGAACAAATTGCAAGGCAAGGTGCCAGAGTATTTGTTGAACTTCTGTCTAAACCAGAAGGAAGGGAACCAAGTTTGCAAGCATTATATAACTTGTCAGGACTGGATGACAATGCAACCGTCCTTGTTGAGTCTTCAGTCCTTCCATCTCTCGTAGAGGTTCTATTTGATGATCAGGATCCTTCATATGAGCTAAAGTCATTAGCTGCTTCAACAATTGCAAATATTGTATCTAAGCCAGGGCGTTGGGAATTAGCATCTGCGGACAAGAATGGGAACCTAATGCAGTCAGAAAATATTGTTTTCAAACTTTTGGAGCTTTTAAATTGCTTGTCTTCTCAGTGTCAAGTGACCGTTCTTCGCATTCTTTGTGGCATTACATCATCTCCTCAGGCATCAGAGTTAGTAGCAAGTCTTATCATGTCTGAGGGTGGCTTTAGAGTGATTATACCATTTCTTCAACACCCAGAAGTTGAACACAGAGTATTTGCTTTTAAGCTTACAAGATTACTATCTGAATGGTTTAGTCAAGATATTGCAAATGAGCTAAGACTTTCAAACAAACTTATGATGCTTCAAGAAAAAATGTTCGATAACCAATCTACAAATGATGAGAGATCAGATGCCGCACAGATACTAGCCAATCTTTCCCTCTCAGAAGGTGAAGTACAGACACTTTTAGGAGATGATTTTGTGGCATGGACTGCTAACACTCTTAAGAACCAGCGGCGTGTTTCCAATGCAAGGTTTTCACATACTGCATCAGGCATGCAGGAAGGTCTTATTGGTCTCTTGCTTCACATCACTAGGAATCTTGATCAACAAACTCTTAACATAGTTAGAGAAAATCGTCTTATGACCATTTTCTGTGAGCAGCTGGATTATACTTCGAAACCAAAAGTAAAACGACTTGCTGCCATTGGATTGAAAAACTTATCAGAATTTGGAAGATCAGTTACTGCTAGGGACTCTGAATCACCCTCTTCTAGTAGATTCTGTTCTTCCCTTGTGCTCATGTGTGGGAGAGCCTCTAGTCAACCTTCCACATGTCCCATTCACAACAGACCCTGCGAGGAAGATAGTCAGTTGTGCCTGCTCAAGAGCAACTGTGTCAAGCCCCTGGTTGATACCCTTAATGGCAATGACACTGATGTTCAACTTGCTGCAGTGGATGCACTATCTACTCTAGTATCAGATTACACATCTCACAGTTTCAAAAGAGTTGTTGATGAGTTTGAGAAACTGGGTGCAATTGATTCTCTGATCACTCTTTCTACAGAGGCTAGATCTGAGAAGCTTCAGGAGAAGACAATTTGGATAATAGAAAAGATACTGAGAGTGGAAAACCTCAGCAACCGGCATGCACTCAATCAGTCTCTCGTGAGAGGTTTGGTTGAGGCGTTTAAGCATGGGAATACCAACACAAGGAAACATGCTCAAGATGCTCTGACCCTCCTAAAGCAGTTATCAGCGGTTAGTGGAAAGACATCAAGTCAAACTCGAGCTCAGAGATAA	3117	0.4514	MPINHSPPPPSTVYSIRRSLSDIRTPPPDHRPFDNPRRFTAFAHRLSHLLLLPLPHSPPVNTALTGISGELSKASETVSVYNNGSKILVLINCKSLCSSLQDRSVSIGGWLSLLASALPDADDDDLRKKVSDLSRDMKLVQFRVTENEERVWCTLEKEGEGRETSKVVQSGIVMDLARALGFDPGDHAEFCNQVKFFKDDPFRSNSVSERRILLFLERILSNWSAEPATVTPNWDFEIVEDDVVAPVFPFKSFLCPLTKEVMRDPVVVMESFQSYERTAIEYWFDQCIQDGRDPTCPVTGAVLKSLELKPNIGLAGAIEEWVGRVVEHQIKSAVVYLSEEPLSVDHVECALDHVYKVSEEHPSSRYVIRNAGVVLLIVTVLSNNSKTIGSRLRSKALMTLLSMAKDEESRKIMLARGITKLAVNSLIGSSEKEREYAVKLLLEFCSDEDCCIRIASEKGALVLLSSIAGNLEYPSLSNLAEEVLRQMERVEDNVHCLAAAGRFEPLISRLHDSSDSVKIEMASLVGRMTLTNSCKEQIARQGARVFVELLSKPEGREPSLQALYNLSGLDDNATVLVESSVLPSLVEVLFDDQDPSYELKSLAASTIANIVSKPGRWELASADKNGNLMQSENIVFKLLELLNCLSSQCQVTVLRILCGITSSPQASELVASLIMSEGGFRVIIPFLQHPEVEHRVFAFKLTRLLSEWFSQDIANELRLSNKLMMLQEKMFDNQSTNDERSDAAQILANLSLSEGEVQTLLGDDFVAWTANTLKNQRRVSNARFSHTASGMQEGLIGLLLHITRNLDQQTLNIVRENRLMTIFCEQLDYTSKPKVKRLAAIGLKNLSEFGRSVTARDSESPSSSRFCSSLVLMCGRASSQPSTCPIHNRPCEEDSQLCLLKSNCVKPLVDTLNGNDTDVQLAAVDALSTLVSDYTSHSFKRVVDEFEKLGAIDSLITLSTEARSEKLQEKTIWIIEKILRVENLSNRHALNQSLVRGLVEAFKHGNTNTRKHAQDALTLLKQLSAVSGKTSSQTRAQR*	1039

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g1797	1038	ProSiteProfiles	U-box domain profile.	248	328	IPR003613	GO:0004842\|GO:0016567
	Apr10g1797	1038	SMART	arm_5	569	612	IPR000225	GO:0005515
	Apr10g1797	1038	SMART	arm_5	361	405	IPR000225	GO:0005515
	Apr10g1797	1038	SMART	arm_5	891	932	IPR000225	GO:0005515
	Apr10g1797	1038	SMART	arm_5	939	980	IPR000225	GO:0005515
	Apr10g1797	1038	SMART	arm_5	531	568	IPR000225	GO:0005515
	Apr10g1797	1038	SMART	arm_5	807	848	IPR000225	GO:0005515
	Apr10g1797	1038	Pfam	Armadillo/beta-catenin-like repeat	898	931	IPR000225	GO:0005515
	Apr10g1797	1038	Pfam	U-box domain	253	322	IPR003613	GO:0004842\|GO:0016567
	Apr10g1797	1038	SUPERFAMILY	ARM repeat	325	614	IPR016024	-

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g1797	Apr-Chr10	31012159	31020256	Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr10g1797	250	1023	U-box Gene Family	AT1G20780	29.004	4.06e-82	282

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g1797	-		-	ccaj:109816409	1655.96

Showing 1 to 1 of 1 entries