Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1797 ATGCCAATCAACCATTCCCCGCCACCGCCCTCCACTGTCTACTCCATCCGCCGCTCCCTCTCCGACATCCGCACTCCGCCGCCCGACCACCGCCCCTTTGACAACCCCCGCCGCTTCACTGCCTTCGCCCACCGCCTCTCCCACCTCCTCCTCCTCCCGCTTCCGCACTCTCCGCCCGTTAACACCGCCCTCACGGGAATCTCCGGCGAGCTCTCCAAGGCCTCCGAAACCGTCTCCGTCTACAACAATGGTAGCAAAATTCTGGTTCTCATTAACTGCAAATCACTCTGTTCCTCTCTCCAAGATCGCTCCGTCTCCATCGGCGGCTGGCTCTCCCTCCTCGCCTCCGCTCTCCCCGATGCCGACGACGACGACCTCCGCAAGAAGGTTTCCGATCTCTCCAGAGACATGAAGCTCGTGCAGTTCAGAGTCACAGAGAACGAAGAGAGAGTTTGGTGCACGCTGGAGAAGGAAGGGGAAGGGAGAGAGACTAGTAAAGTGGTGCAGAGTGGCATTGTCATGGATTTGGCTCGTGCTTTGGGGTTTGACCCTGGTGATCATGCTGAGTTTTGTAACCAGGTGAAGTTCTTCAAGGATGATCCTTTTAGATCCAATTCGGTGTCAGAGAGAAGGATTTTGTTGTTCTTAGAGAGGATTCTTAGTAACTGGTCTGCGGAGCCTGCCACTGTGACCCCCAATTGGGACTTTGAAATTGTTGAAGATGATGTTGTTGCTCCTGTTTTTCCATTTAAGAGTTTCCTCTGCCCCTTGACCAAGGAAGTCATGAGGGACCCTGTGGTTGTTATGGAATCCTTTCAGAGCTATGAAAGGACTGCCATTGAATACTGGTTTGATCAGTGTATCCAGGATGGCCGAGATCCCACTTGTCCGGTTACCGGAGCTGTTCTTAAGTCCTTGGAGCTGAAGCCCAACATTGGGTTGGCTGGGGCAATTGAAGAGTGGGTTGGCAGGGTTGTTGAGCATCAAATCAAATCTGCAGTGGTGTATCTGAGTGAGGAACCCTTGTCTGTTGATCATGTTGAGTGTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCACCCCAGTAGCAGATATGTAATCAGGAATGCTGGTGTTGTGCTGTTAATAGTGACTGTGCTCAGTAATAATTCTAAAACTATTGGATCGCGTTTGAGAAGCAAAGCTCTAATGACGTTACTTAGTATGGCCAAAGATGAAGAAAGCAGGAAAATAATGCTTGCACGAGGCATCACTAAATTGGCTGTAAATAGTCTTATTGGGAGCTCTGAGAAGGAGAGAGAATATGCTGTCAAGTTATTACTAGAATTCTGCAGTGACGAAGATTGTTGCATAAGAATTGCATCAGAAAAAGGTGCATTAGTTCTTCTCTCAAGCATAGCAGGAAATCTGGAGTATCCATCCTTGTCCAATTTAGCTGAGGAAGTCTTAAGGCAGATGGAGAGGGTAGAGGATAATGTTCATTGTTTGGCAGCAGCTGGAAGATTTGAACCATTAATTTCACGGTTACATGATAGTTCTGATAGTGTAAAGATAGAGATGGCTTCTCTGGTGGGAAGGATGACCTTGACAAATAGTTGTAAAGAACAAATTGCAAGGCAAGGTGCCAGAGTATTTGTTGAACTTCTGTCTAAACCAGAAGGAAGGGAACCAAGTTTGCAAGCATTATATAACTTGTCAGGACTGGATGACAATGCAACCGTCCTTGTTGAGTCTTCAGTCCTTCCATCTCTCGTAGAGGTTCTATTTGATGATCAGGATCCTTCATATGAGCTAAAGTCATTAGCTGCTTCAACAATTGCAAATATTGTATCTAAGCCAGGGCGTTGGGAATTAGCATCTGCGGACAAGAATGGGAACCTAATGCAGTCAGAAAATATTGTTTTCAAACTTTTGGAGCTTTTAAATTGCTTGTCTTCTCAGTGTCAAGTGACCGTTCTTCGCATTCTTTGTGGCATTACATCATCTCCTCAGGCATCAGAGTTAGTAGCAAGTCTTATCATGTCTGAGGGTGGCTTTAGAGTGATTATACCATTTCTTCAACACCCAGAAGTTGAACACAGAGTATTTGCTTTTAAGCTTACAAGATTACTATCTGAATGGTTTAGTCAAGATATTGCAAATGAGCTAAGACTTTCAAACAAACTTATGATGCTTCAAGAAAAAATGTTCGATAACCAATCTACAAATGATGAGAGATCAGATGCCGCACAGATACTAGCCAATCTTTCCCTCTCAGAAGGTGAAGTACAGACACTTTTAGGAGATGATTTTGTGGCATGGACTGCTAACACTCTTAAGAACCAGCGGCGTGTTTCCAATGCAAGGTTTTCACATACTGCATCAGGCATGCAGGAAGGTCTTATTGGTCTCTTGCTTCACATCACTAGGAATCTTGATCAACAAACTCTTAACATAGTTAGAGAAAATCGTCTTATGACCATTTTCTGTGAGCAGCTGGATTATACTTCGAAACCAAAAGTAAAACGACTTGCTGCCATTGGATTGAAAAACTTATCAGAATTTGGAAGATCAGTTACTGCTAGGGACTCTGAATCACCCTCTTCTAGTAGATTCTGTTCTTCCCTTGTGCTCATGTGTGGGAGAGCCTCTAGTCAACCTTCCACATGTCCCATTCACAACAGACCCTGCGAGGAAGATAGTCAGTTGTGCCTGCTCAAGAGCAACTGTGTCAAGCCCCTGGTTGATACCCTTAATGGCAATGACACTGATGTTCAACTTGCTGCAGTGGATGCACTATCTACTCTAGTATCAGATTACACATCTCACAGTTTCAAAAGAGTTGTTGATGAGTTTGAGAAACTGGGTGCAATTGATTCTCTGATCACTCTTTCTACAGAGGCTAGATCTGAGAAGCTTCAGGAGAAGACAATTTGGATAATAGAAAAGATACTGAGAGTGGAAAACCTCAGCAACCGGCATGCACTCAATCAGTCTCTCGTGAGAGGTTTGGTTGAGGCGTTTAAGCATGGGAATACCAACACAAGGAAACATGCTCAAGATGCTCTGACCCTCCTAAAGCAGTTATCAGCGGTTAGTGGAAAGACATCAAGTCAAACTCGAGCTCAGAGATAA 3117 0.4514 MPINHSPPPPSTVYSIRRSLSDIRTPPPDHRPFDNPRRFTAFAHRLSHLLLLPLPHSPPVNTALTGISGELSKASETVSVYNNGSKILVLINCKSLCSSLQDRSVSIGGWLSLLASALPDADDDDLRKKVSDLSRDMKLVQFRVTENEERVWCTLEKEGEGRETSKVVQSGIVMDLARALGFDPGDHAEFCNQVKFFKDDPFRSNSVSERRILLFLERILSNWSAEPATVTPNWDFEIVEDDVVAPVFPFKSFLCPLTKEVMRDPVVVMESFQSYERTAIEYWFDQCIQDGRDPTCPVTGAVLKSLELKPNIGLAGAIEEWVGRVVEHQIKSAVVYLSEEPLSVDHVECALDHVYKVSEEHPSSRYVIRNAGVVLLIVTVLSNNSKTIGSRLRSKALMTLLSMAKDEESRKIMLARGITKLAVNSLIGSSEKEREYAVKLLLEFCSDEDCCIRIASEKGALVLLSSIAGNLEYPSLSNLAEEVLRQMERVEDNVHCLAAAGRFEPLISRLHDSSDSVKIEMASLVGRMTLTNSCKEQIARQGARVFVELLSKPEGREPSLQALYNLSGLDDNATVLVESSVLPSLVEVLFDDQDPSYELKSLAASTIANIVSKPGRWELASADKNGNLMQSENIVFKLLELLNCLSSQCQVTVLRILCGITSSPQASELVASLIMSEGGFRVIIPFLQHPEVEHRVFAFKLTRLLSEWFSQDIANELRLSNKLMMLQEKMFDNQSTNDERSDAAQILANLSLSEGEVQTLLGDDFVAWTANTLKNQRRVSNARFSHTASGMQEGLIGLLLHITRNLDQQTLNIVRENRLMTIFCEQLDYTSKPKVKRLAAIGLKNLSEFGRSVTARDSESPSSSRFCSSLVLMCGRASSQPSTCPIHNRPCEEDSQLCLLKSNCVKPLVDTLNGNDTDVQLAAVDALSTLVSDYTSHSFKRVVDEFEKLGAIDSLITLSTEARSEKLQEKTIWIIEKILRVENLSNRHALNQSLVRGLVEAFKHGNTNTRKHAQDALTLLKQLSAVSGKTSSQTRAQR* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1797 1038 ProSiteProfiles U-box domain profile. 248 328 IPR003613 GO:0004842|GO:0016567
Apr10g1797 1038 SMART arm_5 569 612 IPR000225 GO:0005515
Apr10g1797 1038 SMART arm_5 361 405 IPR000225 GO:0005515
Apr10g1797 1038 SMART arm_5 891 932 IPR000225 GO:0005515
Apr10g1797 1038 SMART arm_5 939 980 IPR000225 GO:0005515
Apr10g1797 1038 SMART arm_5 531 568 IPR000225 GO:0005515
Apr10g1797 1038 SMART arm_5 807 848 IPR000225 GO:0005515
Apr10g1797 1038 Pfam Armadillo/beta-catenin-like repeat 898 931 IPR000225 GO:0005515
Apr10g1797 1038 Pfam U-box domain 253 322 IPR003613 GO:0004842|GO:0016567
Apr10g1797 1038 SUPERFAMILY ARM repeat 325 614 IPR016024 -
Apr10g1797 1038 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1032 - -
Apr10g1797 1038 SUPERFAMILY RING/U-box 251 322 - -
Apr10g1797 1038 SUPERFAMILY ARM repeat 500 850 IPR016024 -
Apr10g1797 1038 Coils Coil 473 500 - -
Apr10g1797 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 324 IPR013083 -
Apr10g1797 1038 SUPERFAMILY ARM repeat 728 1020 IPR016024 -
Apr10g1797 1038 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1032 - -
Apr10g1797 1038 Gene3D - 325 850 IPR011989 -
Apr10g1797 1038 Gene3D - 891 1036 IPR011989 -
Apr10g1797 1038 CDD RING-Ubox_PUB 253 300 IPR045210 -
Apr10g1797 1038 SMART Ubox_2 252 321 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1797 Apr-Chr10 31012159 31020256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1797 250 1023 U-box Gene Family AT1G20780 29.004 4.06e-82 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1797 - - ccaj:109816409 1655.96