Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1794 ATGTGTAGTGGTTATAAGAGGAAACCTTCTCAAACTGGTTTGATTAAGGGGGTTGAGTATGGACGACAAGAAGGGTCGCATCTTAAAATTTCTGCCTTGCTCGAGTTTTCAGCCACAGATGATGTAATGGCTTTCAAAGATGCAGTTGAAATAGAGGGTTGTGATGTTGATGAGGTGGGCTTCTGGTACGGGAGGAGGGTTGGCTCAAAAGAAGTGGGTTTCGAAGAGAGGACCCCTCTTATGATTGCTGCTATGTTTGGAAGCAAAAGTGTGTTATCTTATATCCTTGGAACAGGCCATGTTGATGTTAATCAGGCTTGTGGGTCAGATGGAGCTACTGCCCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCCTCCCCTGAGGTCATCAAGCTGTTGCTTGATGCATCTGCGGATGTTAGTACTGTTGATGCTAATGGTAATAGGTCGTGTGACTTGATTGTTTCGGTGTCAAATGGTGTGTTTAATTCAAGGAAGAGGATACTACAGGCCATATTAGAAGGTGCGGATGGTATTGATGAGGCTTACCTTAGATTTGATGATGCTGTACAGCAATATGTATATACACCTCGGAGTTCAAAAGATGGGACTGAGAAGAAAGATTATCCTGTTGATCTCTCTCTTCCTGACATAAAGAATGGGATATATAGCACAGATGAGTTTAGGATGTATACATTTAAAGTGAAGCCTTGTTCAAGAGCTTATTCTCATGATTGGACTGAATGCCCCTTTGTTCATCCTGGGGAAAATGCAAGGCGGCGTGATCCAAGGAAATATCAATATAGTTGTGTCCCTTGCCCTGAGTTTCGGAAGGGATCTTGCAGCAAGGGGGATGCTTGTGAGTATGCGCATGGAATTTTTGAGTGCTGGCTTCACCCTGCTCAATATAGAACACGGCTTTGCAAGGATGAAATTGGATGCACTAGAAGAGTTTGCTTCTTTGCTCACAAGCTGGAGGAGCTTCGTCCTGTGTATGCTTCTACTGGTTCTGCTATGCCTTCTTCCAGTTCATATTCAGCTAGTGCTTCTTCATTGGACGCTTTAACACCACCCTTGACTCCATCTCAAGCATCTTCTCCTGTGAGTGGAACCATGTGGCAGACTCAGTCTCATGTTGCAGCTCCAACCCTTCAGTTGTCTGGAAGCAGATTGAAAACTGCATTAAATACTAGAGATGCTGATTCAGACATTGAATTGCTTGCACATGAAAATCGTCAACTTATGCAGCAGCTGAAGATCGAAGAGATGGCTGCAGTCTCTAGTCTTTCATCCGCTTCTAAATGGAAACGTCCCATGCCTCCATGTCTTTGTAATCAAATCAGGGAGTTACATAGGTTTGCAGGAGTGAGACCGACTAACTTTGAAGACATTTTCGGGTCGCAGATACAATCTCCCACTGGAATTCAGGTGCATCAACATGTGAAACAGCAACTGAGAGACTACCCTTCCAACTTTTCCACTTCAAGAGTGATTCGATCGCCATCGTTCAGTGTCGATCCATCTGGGACAACAGCCAAAATGACTTTGAATCCTAGAGATGCTGCCTTTTCAAATAGGAGCCAGAGCTTTATCGACCATAGTAATGTGAATTGCAATTCTGAGTTTCCTTCTCTTGATACCTCTGTTGCTTTTGAGCCTTATGGCTTCTCTAGTTGGGGCTCCCCTGACGGCAAGTTGGACTGGGCCATATGCGATGATGAACTGAATAAGCTGAGGAAATCTTCTTCTTTTGGATTCCATAGCAGCAATAGTCCTTTAAAATTGGCTTCAACAACTGTGCCACCAAGTGTTGATGAGCCAGATGTGTCTTGGGTTCATTCACTTGTGAAGGATGCTGCACCAATGGAATCTGAACAGTATAATTGTGTCGAAGAGCAACTGCAATTCCATCTTAACGATGGAAAAAATGTGGTGCCAGATAATCAGGAGCAATTGTACATGGAGCATGAGCAGATTGTTGCATAA 1986 0.4406 MCSGYKRKPSQTGLIKGVEYGRQEGSHLKISALLEFSATDDVMAFKDAVEIEGCDVDEVGFWYGRRVGSKEVGFEERTPLMIAAMFGSKSVLSYILGTGHVDVNQACGSDGATALHCAVAGGSAASPEVIKLLLDASADVSTVDANGNRSCDLIVSVSNGVFNSRKRILQAILEGADGIDEAYLRFDDAVQQYVYTPRSSKDGTEKKDYPVDLSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYQYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEIGCTRRVCFFAHKLEELRPVYASTGSAMPSSSSYSASASSLDALTPPLTPSQASSPVSGTMWQTQSHVAAPTLQLSGSRLKTALNTRDADSDIELLAHENRQLMQQLKIEEMAAVSSLSSASKWKRPMPPCLCNQIRELHRFAGVRPTNFEDIFGSQIQSPTGIQVHQHVKQQLRDYPSNFSTSRVIRSPSFSVDPSGTTAKMTLNPRDAAFSNRSQSFIDHSNVNCNSEFPSLDTSVAFEPYGFSSWGSPDGKLDWAICDDELNKLRKSSSFGFHSSNSPLKLASTTVPPSVDEPDVSWVHSLVKDAAPMESEQYNCVEEQLQFHLNDGKNVVPDNQEQLYMEHEQIVA* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1794 661 SMART c3hfinal6 267 293 IPR000571 GO:0046872
Apr10g1794 661 SMART c3hfinal6 302 325 IPR000571 GO:0046872
Apr10g1794 661 Pfam Ankyrin repeats (3 copies) 54 142 IPR002110 GO:0005515
Apr10g1794 661 Gene3D - 267 330 - -
Apr10g1794 661 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Apr10g1794 661 Gene3D - 29 172 IPR036770 -
Apr10g1794 661 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 292 IPR000571 GO:0046872
Apr10g1794 661 ProSiteProfiles Zinc finger C3H1-type profile. 267 294 IPR000571 GO:0046872
Apr10g1794 661 PANTHER UNKEMPT FAMILY MEMBER 20 659 IPR045234 -
Apr10g1794 661 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Apr10g1794 661 SMART ANK_2a 110 142 IPR002110 GO:0005515
Apr10g1794 661 SMART ANK_2a 75 105 IPR002110 GO:0005515
Apr10g1794 661 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 20 659 - -
Apr10g1794 661 SUPERFAMILY Ankyrin repeat 54 156 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1794 Apr-Chr10 30987060 30990133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1794 30 620 C2H2 Transcription Factor Family AT5G12850 38.081 1.51e-135 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr10g1794 Ank_2 4.4e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1794 - - aprc:113846970 847.425