LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g1790	ATGGCGAAAACAACGTCGTTGCTGCTGTGTACACTACTCCTCTTCGGAACCCTAGCTCTAATCCAGGCAAAGAAATCGAAGGAGGATTTGAAGGAAGTGACCCACAAGGTTTACTTTGATGTTGAGATTGATGGAAAAGCTGCAGGTCGAATTGTAATGGGTCTCTATGGGAAGACAGTTCCAAAAACTGCAGAAAACTTTCGAGCTCTTTGCACAGGGGAAAAGGGAACTGGTAAAAGTGGAAAGCCTCTCCATTACAAAGGTAGCTCATTCCATAGAATTATCCCTAGCTTTATGATCCAAGGAGGTGATTTTACACATGGCAATGGAATGGGTGGAGAATCAATTTACGGTGAGAAGTTTGCTGATGAGAACTTCAAGTTAAAGCATACTGGTCCTGACACCAATGGTTCACAATTTTTCATTACAACTGTGACAACTAACTGGTTGGATGGAAGGCATGTTGTTTTTGGTAAGGTTCTATCTGGAATGGATGTTGTTTACAAGATTGAAGCTGAAGGAAAACAAAGTGGCACTCCCAAGAGCAAGGTTGTGATTGCTGACAGTGGTGAACTCCCTCTATAA	585	0.4239	MAKTTSLLLCTLLLFGTLALIQAKKSKEDLKEVTHKVYFDVEIDGKAAGRIVMGLYGKTVPKTAENFRALCTGEKGTGKSGKPLHYKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPDTNGSQFFITTVTTNWLDGRHVVFGKVLSGMDVVYKIEAEGKQSGTPKSKVVIADSGELPL*	195

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g1790	194	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	86	103	IPR020892	GO:0003755\|GO:0006457
	Apr10g1790	194	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	39	189	IPR002130	GO:0000413\|GO:0003755
	Apr10g1790	194	PIRSF	Peptidylpro_ismrse	19	193	IPR024936	GO:0003755
	Apr10g1790	194	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	38	191	IPR002130	GO:0000413\|GO:0003755
	Apr10g1790	194	SUPERFAMILY	Cyclophilin-like	33	192	IPR029000	-
	Apr10g1790	194	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-1	12	194	-	-
	Apr10g1790	194	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	55	70	IPR002130	GO:0000413\|GO:0003755
	Apr10g1790	194	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	91	103	IPR002130	GO:0000413\|GO:0003755
	Apr10g1790	194	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	139	151	IPR002130	GO:0000413\|GO:0003755
	Apr10g1790	194	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	152	167	IPR002130	GO:0000413\|GO:0003755
	Apr10g1790	194	Gene3D	-	22	193	IPR029000	-
	Apr10g1790	194	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	12	194	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g1790	Apr-Chr10	30905571	30908762	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr10g1790	49	171	U-box Gene Family	AT5G67530	41.791	1.29e-21	89.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g1790	K01802		-	gmx:100305485	350.132