Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1779 ATGAAAGGCATTGGAGGTAAAGGTGTTGGTGGAAATGCTATTACTCACCTTCATGTGTGTGGGAATATTAAGGTCACTAACCCTTCTATGTGTCGTTCAGGTCCTCCTTTGACAGCCATAGATAGGTTCTTATGGGGCCAACAAAGCCATTCCCCTCAGAAGCAAAAGCCACAGAACATTGCAAGCAATGGCCATGCAAGTGTTTTTGATGGTTTTGCTTGTTCAGGTGGCTCAACCAACAAGTGTCTCTGGCCTAACATTTCTCAAGAAGCCAACTTTATTGACCAGATTTTAGCAAATGAAGTGGCTCTGAATTGGACACAACACATCCCCACATTGTGTGTGAAAGAAGATGTGCAAGTTTTAGGAAAGAATGCCAAAGTGGCTGCACGTAGGCCTAAGAAAGGGTCCTCTGTGCCTTTGATTAAGGGACAATGGGCTGTTGAAGAAGACAGGAAACTGTTAAAGTTGATAAAGCAACATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAAGTTGGAAGGAAGGGCTGGCAAGCAGTGTCGAGAGAGATGGCATAATCATTTGCGGCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGAATATTGGTAGAAACTCATTCCAAAATTGGAAACCGTTGGGCAGAGATTGCAAAGCGCATTCCAGGAAGAACAGAAAATGCAATAAAGAACCATTGGAATGCAACAAAAAGGAGGCAAAATTCAAAGAGAAAGAACAAAAGGCCAGCAACCTCAAATGGAAAGCCACAATCCTCTATACTCCAAGACTACATAAAAAGCTTGACTCTCACCAACACAACACCTACCACTCCTTTTGAGGACCCTATTGCAGCCCAACAACATCTTGTTTCCCCTCAACTCTCTGATTCTGTTACCAATGACAATTCCTCATCACCACTAATAGCTGAATCATATGATGATGAGTTGCTTTTCATGCAACAACTTTTCAAGGACAATTTCATTGTTGAATCTATTAATATTAAGCACTCAAAGAACAATAACTCTTCAACCTCCTTGGCTTGTTATAACCAAAGTAATGGTGATCAGCTTCTCACTGATGTCAATGAATGTGGATTTATTCATTCCAACCCAAACACGAACTCACATAACATGTTTTTTGATGAGAATCTCATTATCCCTAGAAAGACTCATCCTACCCCTACCAACTACCTTGATTCTGATGCCTATCTCTCTCACTTGCTGAATGGAACTGCAGCTTCATCACTTTGCTATAATTATGGGATTGAAAACCATAATATGGACTTGGATGTTGGAGAACAAGGTTGTTTAGAGGGAAAGAGAGAGATCGATTTGATAGAGTTGGTTTGTTCAGCTCAGCTTCTCCATTAG 1380 0.4087 MKGIGGKGVGGNAITHLHVCGNIKVTNPSMCRSGPPLTAIDRFLWGQQSHSPQKQKPQNIASNGHASVFDGFACSGGSTNKCLWPNISQEANFIDQILANEVALNWTQHIPTLCVKEDVQVLGKNAKVAARRPKKGSSVPLIKGQWAVEEDRKLLKLIKQHGVRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVETHSKIGNRWAEIAKRIPGRTENAIKNHWNATKRRQNSKRKNKRPATSNGKPQSSILQDYIKSLTLTNTTPTTPFEDPIAAQQHLVSPQLSDSVTNDNSSSPLIAESYDDELLFMQQLFKDNFIVESINIKHSKNNNSSTSLACYNQSNGDQLLTDVNECGFIHSNPNTNSHNMFFDENLIIPRKTHPTPTNYLDSDAYLSHLLNGTAASSLCYNYGIENHNMDLDVGEQGCLEGKREIDLIELVCSAQLLH* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1779 459 CDD SANT 146 189 IPR001005 -
Apr10g1779 459 PANTHER MYB PROTEIN-RELATED 47 416 - -
Apr10g1779 459 SMART sant 194 242 IPR001005 -
Apr10g1779 459 SMART sant 142 191 IPR001005 -
Apr10g1779 459 Gene3D - 196 265 - -
Apr10g1779 459 Pfam Myb-like DNA-binding domain 146 203 - -
Apr10g1779 459 PANTHER MYB TRANSCRIPTION FACTOR 47 416 - -
Apr10g1779 459 MobiDBLite consensus disorder prediction 239 253 - -
Apr10g1779 459 ProSiteProfiles Myb-like domain profile. 190 240 IPR001005 -
Apr10g1779 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 138 193 IPR017930 -
Apr10g1779 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 244 IPR017930 -
Apr10g1779 459 Gene3D - 142 194 - -
Apr10g1779 459 MobiDBLite consensus disorder prediction 228 261 - -
Apr10g1779 459 CDD SANT 197 240 IPR001005 -
Apr10g1779 459 ProSiteProfiles Myb-like domain profile. 143 189 IPR001005 -
Apr10g1779 459 SUPERFAMILY Homeodomain-like 140 236 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1779 Apr-Chr10 30760627 30762765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1779 33 455 MYB Transcription Factor Family AT5G58850 40.135 1.41e-87 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr10g1779 Myb_DNA-bind_6 3.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1779 K09422 - gmx:100786295 530.02