LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g1778	ATGGCATCCATTGCCACCTTCTTCAACAAGTTCCTCTATCTTCTCATCCTTCTTGTCCACCTTGGCTGCTTCATCTTCACCACCACCACCTCCACTGCCGCCGGAAAACAAGACAACCGCCACGCGCCGCAGTCAAAGAAACGAAAAATCTCACCTTTATCCCAACCCTCTTCTCCTTCCCACCCCAAATTCAAAACCCACAAAGCACTTTCATCTTCTTGGCATTTCATCAAACACCTCTTTTCCACCAAGTCCTGTAAAACCACCACCGCCACCGCCCAATCATCCCCACAATCCACCGCCAACACCACCGTCTCCGCCGCCGCCGCCGCGAATTCCTTAACCACCGCAAGAACCTCCCACCAATCGCTCATTTCTCTAACACAACCCGACCTGTTTTCTCCGGATCTTCAACGCAAAAAACCAACTGGGCCGTGCCCCGAATCCGATATCTCCGCCGACAACAACCTCTTCTTCCCTCTCCGCAACGACATCTTCCCCTGCACCGCGTGCGGCGAGATCTTTCAGAAACCCCAGTTCCTCGAACAACACCAATCCACAAAACACGCCGTTTCGGAGCTAACCGGATCGGACCCGGGTCACAACATTGTCCAAATCATATTCAAGTCGGGTTGGCCCGAAACCAAGGAGTTTCCGCGCGTAACACGAATCCTAAAGATCCACAACAGCCCCAAGATCCTCTCCAAGTTCGAGGAATACCGCGAGAGCGTGAAATCCAAGGCCACGCGCCATGGCACCCTCACGCGCCGCCGTGACGAGCGGTGCATCGCCGACGGCAACGAGCTCATGCGTTTCCACTGTGCCACGTTCTTATGCGAATTGGGACAAAATGGGGATTCTTCGATTTGTTCACAGCAATTTTGTAATATTTGTGGTATCATAAAATCAGGGTTTTCTCCTAAGCTTGATGGAATTTCCACGCTGTCCACCAGCTGGCGTGCACATGTGTCAATTCCTGATGACGTGGAGCGTGAGTTTCGCTTCATGAACGTGAAGCGGGCCATGCTAGTGTGTCGGGTAATTGCGGGTCGGGTTGGATCCGATTCTGATGACGTGGAAAAGGAGGATGGGGGTTTTGATTCGGTGATGGCGCGTGGAGAGAGTGGAGTTTACACACGCCTTGATGAGGAGGAGCTGTTGGTGTTTAATCCTAGGGCTGTGCTTCCTTGCTTTGTCATTGTGTATAGTGTGTGA	1215	0.5243	MASIATFFNKFLYLLILLVHLGCFIFTTTTSTAAGKQDNRHAPQSKKRKISPLSQPSSPSHPKFKTHKALSSSWHFIKHLFSTKSCKTTTATAQSSPQSTANTTVSAAAAANSLTTARTSHQSLISLTQPDLFSPDLQRKKPTGPCPESDISADNNLFFPLRNDIFPCTACGEIFQKPQFLEQHQSTKHAVSELTGSDPGHNIVQIIFKSGWPETKEFPRVTRILKIHNSPKILSKFEEYRESVKSKATRHGTLTRRRDERCIADGNELMRFHCATFLCELGQNGDSSICSQQFCNICGIIKSGFSPKLDGISTLSTSWRAHVSIPDDVEREFRFMNVKRAMLVCRVIAGRVGSDSDDVEKEDGGFDSVMARGESGVYTRLDEEELLVFNPRAVLPCFVIVYSV*	405

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g1778	404	PANTHER	C2H2-LIKE ZINC FINGER PROTEIN	3	403	-	-
	Apr10g1778	404	MobiDBLite	consensus disorder prediction	129	149	-	-
	Apr10g1778	404	ProSiteProfiles	Zinc finger C2H2 type domain profile.	166	194	IPR013087	-
	Apr10g1778	404	MobiDBLite	consensus disorder prediction	48	65	-	-
	Apr10g1778	404	MobiDBLite	consensus disorder prediction	35	65	-	-
	Apr10g1778	404	PANTHER	NUCLEIC ACID BINDING PROTEIN	3	403	-	-
	Apr10g1778	404	ProSitePatterns	Zinc finger C2H2 type domain signature.	168	189	IPR013087	-
	Apr10g1778	404	Gene3D	-	190	403	-	-
	Apr10g1778	404	SUPERFAMILY	ADP-ribosylation	192	403	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g1778	Apr-Chr10	30747611	30748992	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr10g1778	74	404	C2H2 Transcription Factor Family	AT2G29660	52.941	2.70e-110	327

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Apr10g1778		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g1778	-		-	gmx:100785244	616.305