LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g1770	ATGAAGTGGGAAATGGAAATCCTCCCTCCTCCGACCGCACCATATATTCACAACTCGAATTGGCTTCTTGATGATAACAGGAACAACACCAAATGGACCCCTGCAGAGAACAAGCTCTTTGAAAATGCTCTTGCAGTGTATGATAAGGACACCCCAGATCGGTGGCACAAAGTGACTGAGATGATACCTGGAAAAACAGTTTTGGATGTGATAAAGCACTACAAGGAATTGGAAGTTGATGTTTGTAACATAGAAGCTGGTTTGATCCCAATTCCTGGCTACACTACCACTTCACCCTTCACCTTAGATTGGGTGAACACTCCTGGCTATGATGGCTTCAAAGGACTCACTGCAAAGAGATCCTCCTCAGGTAGAGCTCCTGATCAGGAAAGGAAGAAAGGCGTGCCATGGACTGAAGAGGAACACAAATTGTTTCTACTGGGGCTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATATCACGCAATTTTGTGATTACTCGAACTCCAACCCAAGTGGCAAGCCATGCTCAGAAATACTTCATCAGGCAACTTTCGGGGGGCAAAGACAAGAGGAGGGCAAGCATCCATGATATAACAACGGTTAATCTCGCGGAGACCACAAGAACTTCTCCTTCGGAAGACAACAAGAGATCCACTTCACCTCAGCATTCCATGATGGTCTCACACCAGCAGCCAAATCCTAGTGCCGCCTCGTCTGGAATGCATTTTCAATGGAGTAATCAGCCAAGTGCAGGAGTAGCTATGGCACTGAATCCAGCACATGAGCAAGTGTTCATGCCTCCTTATGGCCTCAACTCTTATGGATTTAAAGTGCAGGGTCAGAATCTGCACAGAAATTCTCTTCATGAGTCTTCTTACATAGGACCTCAGACCCAAAACATGGTTTTCCAAATGCATTCCTCCCAAAACTATTCCCATGCATGA	948	0.4546	MKWEMEILPPPTAPYIHNSNWLLDDNRNNTKWTPAENKLFENALAVYDKDTPDRWHKVTEMIPGKTVLDVIKHYKELEVDVCNIEAGLIPIPGYTTTSPFTLDWVNTPGYDGFKGLTAKRSSSGRAPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLAETTRTSPSEDNKRSTSPQHSMMVSHQQPNPSAASSGMHFQWSNQPSAGVAMALNPAHEQVFMPPYGLNSYGFKVQGQNLHRNSLHESSYIGPQTQNMVFQMHSSQNYSHA*	316

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g1770	315	SUPERFAMILY	Homeodomain-like	21	75	IPR009057	-
	Apr10g1770	315	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	129	185	IPR017930	-
	Apr10g1770	315	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	1	289	IPR043363	-
	Apr10g1770	315	PANTHER	MYB TRANSCRIPTION FACTOR MYB51	1	289	-	-
	Apr10g1770	315	ProSiteProfiles	SANT domain profile.	29	82	IPR017884	-
	Apr10g1770	315	SUPERFAMILY	Homeodomain-like	131	184	IPR009057	-
	Apr10g1770	315	Gene3D	-	24	91	-	-
	Apr10g1770	315	ProSiteProfiles	Myb-like domain profile.	129	181	IPR001005	-
	Apr10g1770	315	CDD	SANT	31	77	IPR001005	-
	Apr10g1770	315	Pfam	Myb-like DNA-binding domain	136	181	IPR001005	-
	Apr10g1770	315	Pfam	Myb-like DNA-binding domain	31	76	IPR001005	-
	Apr10g1770	315	MobiDBLite	consensus disorder prediction	204	245	-	-
	Apr10g1770	315	ProSiteProfiles	SANT domain profile.	137	185	IPR017884	-
	Apr10g1770	315	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	132	184	IPR006447	GO:0003677
	Apr10g1770	315	SMART	sant	133	183	IPR001005	-
	Apr10g1770	315	SMART	sant	28	80	IPR001005	-
	Apr10g1770	315	CDD	SANT	136	181	IPR001005	-
	Apr10g1770	315	Gene3D	-	135	185	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g1770	Apr-Chr10	30679754	30682482	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Apr10g1770		Myb_DNA-binding	1.6e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g1770	-		-	gmx:100784163	542.347