Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1764 ATGTTTTTCAAAGCAAACATGCAAGCAAGAACAGAACAAGAGCAACAAGACCCAGGTGCTAGCCGCCCCCAACTTCTCTTTACCCTGTTGGAACAAGTCAACAAGTTAATCAATTTAATCAAGAACTGGTTCCAGCAACAAATAATGGCTCAAGCGCAATTCATGGGGTACCAAAATTTGTTGAAAACAAAATCACCCCTTGATCATGATCACGATCATGTTGTTGAAGCAAAGAAGATTGGTCAACCCTCACAATTCCTTTGTGGTATATGTTTTGATCACAAACCAGTGTCTGATATGTTCAAACAAGGTAAGTGTAACCACCCTTTTTGCACAATCTGCATATCCAAACACGTGGCTACTCAAATACACCAAAATATTCTCAAGGTCAATTGTCCTAATCCAAATTGTTCTATGGAATTAAAGCCTGAATTTTTGCATACCATTTTGCCTAAAGAAGTTATTGTTAGATGGGAAACTGCCAGATGTGAGGCTTTGATTGTTGGGTCGGAGAAGACTTATTGCCCCTTTAAAGATTGTTCTGTTTTGTTGTTGGATGATGGAGGAAAAGTTGTGATCAGTGCTGAGTGCCCTTCTTGTCATAGGCTGTTTTGTGCACAGTGTAGGGTTCCTTGGCATGGAGGGTGGAGTTGTAAGGAGTACCAAAGGCTGAAAAAGAGTAGAGATGAAAAAGAGTTGGATAAGAAGTTTCTCAAGTTGGCCAAAGGGAAAATGTGGCAAAAATGTCCCCAATGTGCTATGTTTGTACAAAGACGTGGTGGTTGTGAACACATGACTTGCAGGTGTGGATGCAACTTCTGCTACAACTGTGGGGGGAATTGGAAATTTGGACATATATGCAAAAAGTCTCGGTCCACATAA 882 0.407 MFFKANMQARTEQEQQDPGASRPQLLFTLLEQVNKLINLIKNWFQQQIMAQAQFMGYQNLLKTKSPLDHDHDHVVEAKKIGQPSQFLCGICFDHKPVSDMFKQGKCNHPFCTICISKHVATQIHQNILKVNCPNPNCSMELKPEFLHTILPKEVIVRWETARCEALIVGSEKTYCPFKDCSVLLLDDGGKVVISAECPSCHRLFCAQCRVPWHGGWSCKEYQRLKKSRDEKELDKKFLKLAKGKMWQKCPQCAMFVQRRGGCEHMTCRCGCNFCYNCGGNWKFGHICKKSRST* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1764 293 SUPERFAMILY RING/U-box 235 287 - -
Apr10g1764 293 SUPERFAMILY RING/U-box 83 165 - -
Apr10g1764 293 ProSiteProfiles Zinc finger RING-type profile. 88 133 IPR001841 -
Apr10g1764 293 ProSiteProfiles TRIAD supradomain profile. 84 293 IPR044066 -
Apr10g1764 293 SUPERFAMILY RING/U-box 164 223 - -
Apr10g1764 293 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 60 288 - -
Apr10g1764 293 SMART ibrneu5 156 218 IPR002867 -
Apr10g1764 293 SMART ibrneu5 231 287 IPR002867 -
Apr10g1764 293 ProSitePatterns Zinc finger RING-type signature. 106 115 IPR017907 -
Apr10g1764 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 169 IPR013083 -
Apr10g1764 293 Pfam IBR domain, a half RING-finger domain 239 285 IPR002867 -
Apr10g1764 293 Pfam IBR domain, a half RING-finger domain 168 218 IPR002867 -
Apr10g1764 293 Gene3D - 216 292 - -
Apr10g1764 293 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 60 288 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1764 Apr-Chr10 30644939 30646310 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1764 88 279 C3H Transcription Factor Family AT2G19610 33.010 1.61e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1764 K11975 - gmx:102663173 296.589