Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1761 ATGGGTGATCAACCCTCAAAATGCTTATGCTTTGATTTCAAACCAGAGTCTGATACGTTCAGAATCAGAAGAAGCATCTGCAACCACCCCTTTTGCACTGGCTGCATAACCAACTATGTTTCTGCCCAGATACAAAACAGTATTCTCAATCAGAATTGTCCAAATCCAAATAGTCATGCGGAAGTGGAATTGAAGCCTTTATGTGGAATTGAAGTTATTGATGGATGGGAATCTGCAAGGTGTGAGTCTTCAACTGCTGAATGGGAAAAGACTTATTGTCCCTTTAAGAATTGTTCAGTTTTGTTAGTGAATGATGGAGAAAAAGTTGTGACAAGGGCTGAATGCCCTTCATGTCAAAAGCTATTTTGTGCTCAATGTAGGGTTCCATGGCATGCAGATATGACTTGTAAGGAATTCCAAAAGCTGAAAAGGAATAATGATGAAGGAGATTTGGATAGCAAGTTTTTGGATTTGGCCAAAAGGAATAGAAGCCAGAGATGA 501 0.3952 MGDQPSKCLCFDFKPESDTFRIRRSICNHPFCTGCITNYVSAQIQNSILNQNCPNPNSHAEVELKPLCGIEVIDGWESARCESSTAEWEKTYCPFKNCSVLLVNDGEKVVTRAECPSCQKLFCAQCRVPWHADMTCKEFQKLKRNNDEGDLDSKFLDLAKRNRSQR* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1761 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 88 IPR013083 -
Apr10g1761 166 SMART ibrneu5 74 136 IPR002867 -
Apr10g1761 166 SUPERFAMILY RING/U-box 9 57 - -
Apr10g1761 166 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 8 160 IPR031127 GO:0004842|GO:0016567
Apr10g1761 166 ProSitePatterns Zinc finger RING-type signature. 27 36 IPR017907 -
Apr10g1761 166 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 8 160 - -
Apr10g1761 166 SUPERFAMILY RING/U-box 88 142 - -
Apr10g1761 166 ProSiteProfiles TRIAD supradomain profile. 2 166 IPR044066 -
Apr10g1761 166 Pfam IBR domain, a half RING-finger domain 88 136 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1761 Apr-Chr10 30631225 30631725 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1761 9 141 C3H Transcription Factor Family AT2G19610 25.000 3.42e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1761 K11975 - gmx:102663173 191.045