Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1757 ATGATGTCATATTCAAGGAGATCAAGGTATTCTCCTTCTCCTTCTCCATACAGGCGATTCAGTAGGTCTGTGTCCAGGTCTCTCTCAAGGTCAAGATCCCGAAGCCGGTCAAGGAGTCTATCAAGAGACGCCGAAAATCCTGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGAGAACTAGAGAAGCATTTTGCAACTGAGGGAAAAGTGATAGATGTACATCTGGTAGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGCTTTGTGACAATGGAAACTGTTGGAGAGGCTGATCGATGTGTAAAGTATCTGAATCGCTCTGTACTTGAAGGACGTGTTATCACTGTGGAGAAGGCTAAAAGACGACGTGGTCGAACCCCAACACCTGGACGGTATCTTGGGCTGAGGACTATTCGAGGTCGTCGCCGTACTCCAAGCCACTCTCCTCGTCGCTCTCCAAGCTATTCTCCTTACAGAAGAAGCTATAGTCGGTCACCATATTCTTCTGATCGTAGCAGGAGTCGTTCTTTTTCTCCTGACTTCCGGCGGGGGAGGAGGTCTTACTCTCCATACCACTACCGCCGGCGGCGGCGGTCTTACTCTCCATACTATAGCCGGCACAGGTCTTATTATCGATATGATCGACAAAGGTCATATTCTCGATCACCTGTCAGCATACGGGACAGATCATACTCTCCCTATGACTCAAGATATGACTCACCTGATGAGCGCAGCTACAGAAGGCACCGGTATAGGTCTGTTTCTCGAAGTGCCTCACCTGATGATCGCCACTATGGAAGGCACCGTTACAGGTCTGTTTCTCGAAGTGCCTCACCTGATGATCGCCACTATGGAAGGCACCGTTACCGGTCTGTTTCTCGAAGTGCCTCTCCTAGGCCAAAGAGAAGGTCAAGGAGGAGCTACTCAAGGAGTGCCTCTCCTGTTTCAAGGAGGGGCTACTCGCGAAGTGTGTCCCCCAGATCAAGGAGGAGTACTCATTCAAGAAGCTCCAAAAGAAGTGGCCGTATTTCAAAACGCTACTCAAGAAGCCCGAGTGTGAGTGTGAGTGCAAGTTCAAGATCAGTATCGAGGTCTAATACTCCAGGATCTGCTTCTCCTTCAGCTTGA 1146 0.4939 MMSYSRRSRYSPSPSPYRRFSRSVSRSLSRSRSRSRSRSLSRDAENPGNNLYVTGLSPRITKRELEKHFATEGKVIDVHLVVDPWTRESRGFGFVTMETVGEADRCVKYLNRSVLEGRVITVEKAKRRRGRTPTPGRYLGLRTIRGRRRTPSHSPRRSPSYSPYRRSYSRSPYSSDRSRSRSFSPDFRRGRRSYSPYHYRRRRRSYSPYYSRHRSYYRYDRQRSYSRSPVSIRDRSYSPYDSRYDSPDERSYRRHRYRSVSRSASPDDRHYGRHRYRSVSRSASPDDRHYGRHRYRSVSRSASPRPKRRSRRSYSRSASPVSRRGYSRSVSPRSRRSTHSRSSKRSGRISKRYSRSPSVSVSASSRSVSRSNTPGSASPSA* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1757 381 MobiDBLite consensus disorder prediction 155 180 - -
Apr10g1757 381 PANTHER TRANSFORMER-2-RELATED 9 265 - -
Apr10g1757 381 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Apr10g1757 381 MobiDBLite consensus disorder prediction 1 52 - -
Apr10g1757 381 MobiDBLite consensus disorder prediction 1 28 - -
Apr10g1757 381 CDD RRM_RBMX_like 48 127 - -
Apr10g1757 381 Gene3D - 4 133 IPR012677 -
Apr10g1757 381 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 9 265 - -
Apr10g1757 381 SUPERFAMILY RNA-binding domain, RBD 40 152 IPR035979 GO:0003676
Apr10g1757 381 MobiDBLite consensus disorder prediction 238 293 - -
Apr10g1757 381 MobiDBLite consensus disorder prediction 294 314 - -
Apr10g1757 381 MobiDBLite consensus disorder prediction 352 381 - -
Apr10g1757 381 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 120 IPR000504 GO:0003723
Apr10g1757 381 MobiDBLite consensus disorder prediction 334 351 - -
Apr10g1757 381 MobiDBLite consensus disorder prediction 125 200 - -
Apr10g1757 381 MobiDBLite consensus disorder prediction 315 333 - -
Apr10g1757 381 SMART rrm1_1 50 123 IPR000504 GO:0003723
Apr10g1757 381 MobiDBLite consensus disorder prediction 220 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1757 Apr-Chr10 30605880 30610019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1757 50 131 Eukaryotic Initiation Factors Gene Family AT2G36660 32.927 4.22e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1757 - - gmx:100808038 276.944