Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1744 ATGCAGTCCAAGTCTGAAACTGCAAACCGACTGAGGTCAGATCCTCATTCTGTTCAACCCAGCAGCGTTTATTCTGAGCCTTGGTGGCGCGGTATTGGTTACAATCCCATTGCCCAAACAATGGCTGGGACAAATCCATCAAATTCGTCTCTTGAATGCCCTAATGGTGATTCTGAATCCAATGAAGAAGGCCAGTCTTTGTCCAATAGTGGGATGAATGAGGAAGATGATGATGCCACTAAAGATTCCCAGCCTGCTGCTCTGAATCAATCAGGGAATTATGGGCAAGAACAGCAAATGCAGCATACTGCATCATCTGCGCCGCCCATGCATGATGAATGCCTTACTCAGACGCCACAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCGCTTGAGATGGCTCAAGAGCCTGTGTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAGGCCCGTGCTAAAGCAGAGCTTGAAAAGAAGCTAATAAAATCTAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGGAGGGCAAGGGGTAGCGGTGGACGTTTTGCAAAGAAATCTGATGCTGAAGCCTCGAACAACTCAGGCAAGGAAAGGGATAATGGTTCTGGTCCTGTCCTATCATCACAGTCAATTAGTTCATCTGGTTCTGAACCTTTACATTCTGACTCCACCGAAACCTGGAATTCTCCTCACGTGCAACAAGATGCAAGAACATCAAAAGCTCACGACAGGTTTGAAGCACCCAACTATGAAAATGGCAGTGGCTCCTACCATAATCATAATGGTTTGCAATCTTCAACGTATCATTCTTCCTCAGGTGAAAGATTGGAGGAGGGGGACTGTTCAGGTCAGCAACGGGGAAGCCTCGCTTCAAGCCATGCGTCACAGAGGCGCCTTGCTATTCAGTAG 1050 0.4705 MQSKSETANRLRSDPHSVQPSSVYSEPWWRGIGYNPIAQTMAGTNPSNSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSQPAALNQSGNYGQEQQMQHTASSAPPMHDECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRARGSGGRFAKKSDAEASNNSGKERDNGSGPVLSSQSISSSGSEPLHSDSTETWNSPHVQQDARTSKAHDRFEAPNYENGSGSYHNHNGLQSSTYHSSSGERLEEGDCSGQQRGSLASSHASQRRLAIQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1744 349 PRINTS CCAAT-binding transcription factor subunit B signature 175 197 IPR001289 GO:0003700|GO:0006355
Apr10g1744 349 PRINTS CCAAT-binding transcription factor subunit B signature 206 229 IPR001289 GO:0003700|GO:0006355
Apr10g1744 349 MobiDBLite consensus disorder prediction 205 349 - -
Apr10g1744 349 MobiDBLite consensus disorder prediction 83 113 - -
Apr10g1744 349 Gene3D - 172 234 - -
Apr10g1744 349 MobiDBLite consensus disorder prediction 38 73 - -
Apr10g1744 349 MobiDBLite consensus disorder prediction 207 226 - -
Apr10g1744 349 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 38 339 - -
Apr10g1744 349 MobiDBLite consensus disorder prediction 1 24 - -
Apr10g1744 349 MobiDBLite consensus disorder prediction 242 282 - -
Apr10g1744 349 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 229 IPR001289 GO:0003700|GO:0006355
Apr10g1744 349 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 38 339 IPR001289 GO:0003700|GO:0006355
Apr10g1744 349 ProSitePatterns NF-YA/HAP2 subunit signature. 177 197 IPR018362 GO:0003677|GO:0016602
Apr10g1744 349 ProSiteProfiles NF-YA/HAP2 family profile. 172 232 IPR001289 GO:0003700|GO:0006355
Apr10g1744 349 MobiDBLite consensus disorder prediction 299 319 - -
Apr10g1744 349 SMART cbf3 171 232 IPR001289 GO:0003700|GO:0006355
Apr10g1744 349 MobiDBLite consensus disorder prediction 1 113 - -
Apr10g1744 349 MobiDBLite consensus disorder prediction 331 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1744 Apr-Chr10 30351214 30356058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1744 16 276 CCAAT-HAP2 Transcription Factor Family AT5G12840 56.818 2.11e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Apr10g1744 CBFB_NFYA 5.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1744 K08064 - gmx:100808378 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1744 10 30351214 30356058 Apr9g1873 9 27405855 27409841 PCT