Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1730 ATGAAGATCACTGTAATGACTGCTGATGAACAAATTCTCACATTGGATGTGGATCCCCACGAATCTGTGGAAAACGTTAAAGCATTGCTCGAGGTTGAGACAAGTGTGCCTCTTCAGCAACAGCAGCTTCTGTTTAATGGGAGGGAAGTGAGGAATTCTGAGAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTCATGATGGTCTCTGGTGCTGCTGCTTCTAGCGGATCTAACAATGATTTGAGCTTAAATGCTGATGGGTCTGCTGTCAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAACGATCTTAATAAATTGCAGGAAATTTTGCGTTTGCGTCATCACCAAAGAGATGAATTACGGCGTCAGAAAGAAGAGGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCAGCTGCAATAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCGCACTGAAGGCATTTGTTGATAGTGGAGCCCAGTCTACCATTATATCAAAAAGCTGTGCTGACCGTTGTGGATTGTTGAGACTTCTGGATCAGCGTTACAAAGGAATTGCTCATGGAGTTGGCCAGTCGGAAATATTGGGTCGAATACATGTTGCTCCAATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCTTTGGGCTGGATATGCTACGAAAGCACCAGTGTATAATTGATTTGAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTGTCTGTGCCATTTTTGCAAGAGAAAGACATACCTTCTCGGTATTTAGATGAGGAAAAGTATGCTAAGGAAGCTTCAAGCTCTGGCGGTCAAGTTACATCAGGGAGCAATAATCCATCCATAGGAGGCCAGTCTTCTGGTGGAGCTGCTGGTGACAGGCCTAAGGATTCTGATTTTGAAGCCAAAGTTGCAAAGCTTGTTGAGTTGGGATTTGAAAGAAATGCAATTATACAAGCTCTTCAATTATTCAATGGCAATGAGGAACAAGCAGCTGCGTTTCTTTTTGGGGGCTGA 1221 0.4324 MKITVMTADEQILTLDVDPHESVENVKALLEVETSVPLQQQQLLFNGREVRNSEKLSALGVKDDDLLMMVSGAAASSGSNNDLSLNADGSAVNPGAFQQHIRRDSNLMGQLFQSDPELAQAILGNDLNKLQEILRLRHHQRDELRRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAAIEHNPEAFARVVMLYVDMEVNGVALKAFVDSGAQSTIISKSCADRCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRYLDEEKYAKEASSSGGQVTSGSNNPSIGGQSSGGAAGDRPKDSDFEAKVAKLVELGFERNAIIQALQLFNGNEEQAAAFLFGG* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1730 406 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 363 406 IPR015940 -
Apr10g1730 406 SUPERFAMILY Acid proteases 183 298 IPR021109 -
Apr10g1730 406 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 404 - -
Apr10g1730 406 PANTHER AT13091P 1 404 - -
Apr10g1730 406 SMART uba_6 368 405 IPR015940 -
Apr10g1730 406 Coils Coil 130 150 - -
Apr10g1730 406 PRINTS Ubiquitin signature 11 31 IPR019956 -
Apr10g1730 406 PRINTS Ubiquitin signature 32 52 IPR019956 -
Apr10g1730 406 SUPERFAMILY Ubiquitin-like 1 74 IPR029071 -
Apr10g1730 406 MobiDBLite consensus disorder prediction 335 354 - -
Apr10g1730 406 Gene3D - 1 83 - -
Apr10g1730 406 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Apr10g1730 406 Pfam UBA/TS-N domain 369 403 IPR015940 -
Apr10g1730 406 Pfam Aspartyl protease 175 297 IPR019103 GO:0004190|GO:0006508
Apr10g1730 406 CDD UBA_scDdi1_like 369 404 - -
Apr10g1730 406 Gene3D - 369 404 - -
Apr10g1730 406 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Apr10g1730 406 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Apr10g1730 406 SMART ubq_7 1 72 IPR000626 GO:0005515
Apr10g1730 406 CDD RP_DDI 182 305 IPR019103 GO:0004190|GO:0006508
Apr10g1730 406 MobiDBLite consensus disorder prediction 335 365 - -
Apr10g1730 406 SUPERFAMILY UBA-like 352 406 IPR009060 GO:0005515
Apr10g1730 406 Gene3D Acid Proteases 176 322 IPR021109 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1730 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 1.37e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1730 K11885 - gmx:100779464 729.939