Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1708 ATGAATTGTCCATGTCCATCGGAATTGGTGTTTAATTCAAGCAGCATGGCTTCATTTACTTCAAATTCATCATCAGAGCACAGCATGGCCAGTGCACAAAACATTCCTCCTCATGCTTCTTCCACCCCTTCTTTCATGACTAGGGTGGCCATGAGAATTTCTAGATCAAGGTGGTTCACCTTCTTAAGAAGAGTGTTCCATTACCAAAATGGACCAAGATCTGATCTTGATTCTAACCCTTTCAATTCTAGCACTTGGATGATGCTGGAGTTGGTTGCTTTATTGGTTCAAATAACAAGTACAACATTCACCTTGGTCATTTCAAAGAGTGAAAAGCCTATTTGGCCTATGAGGGTATGGATAGCAGGTTATGATATTGGTTGTGTCCTTAATCTGCTGCTACTTTGTGGCCGCTACCATCAACTTCATGTGACTCAAAGGGATTCTCTTAGCCTTTCTGAATTGGAGCAGCAGAGAAACAATGAAGAAACAAGTGTGTACAGGAGCTCACATTTGATGAACAAATGCCGAAGTTCACTAGAGCTTTTCTTTGCCATATGGTTTGTGATGGGCAATGTTTGGGCCTTCGACTCACGTTTTGGATCTTTCCAAAATGCTCCAAAACTCCAAGTGCTCTGCATCATCTTGCTTTCTTGGAATGCAATTTGCTACTCCTTCCCTTTTCTACTGTTTTTGCTTCTGTGTTGTTGTGTGCCACTACTTAGCACCCTCCTTGGATACAACATGAACATGGGTGCCTCTGCTAGAGGAGCTTCTGAAGATCAAATCTCACAACTCCCAAGTTGGAGATATAAAATTGTTCAATTTGACAATGACTCTCAAAGCAGTCAAAGATTGATCGATGAAGATCCAGAGGAATGTTGCATTTGCTTAGTCAAATACACAGAGAAAGAAGAAGTTAGGCAATTGCCCTGTTCCCATCTGTTCCACCTAAAATGTGTGGATCAATGGCTAAGAATTATATCATGTTGCCCTCTTTGTAAACAAGGATTACAAAGATAG 1023 0.4106 MNCPCPSELVFNSSSMASFTSNSSSEHSMASAQNIPPHASSTPSFMTRVAMRISRSRWFTFLRRVFHYQNGPRSDLDSNPFNSSTWMMLELVALLVQITSTTFTLVISKSEKPIWPMRVWIAGYDIGCVLNLLLLCGRYHQLHVTQRDSLSLSELEQQRNNEETSVYRSSHLMNKCRSSLELFFAIWFVMGNVWAFDSRFGSFQNAPKLQVLCIILLSWNAICYSFPFLLFLLLCCCVPLLSTLLGYNMNMGASARGASEDQISQLPSWRYKIVQFDNDSQSSQRLIDEDPEECCICLVKYTEKEEVRQLPCSHLFHLKCVDQWLRIISCCPLCKQGLQR* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1708 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 339 IPR013083 -
Apr10g1708 340 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Apr10g1708 340 SMART ring_2 294 334 IPR001841 -
Apr10g1708 340 Pfam Ring finger domain 293 335 IPR001841 -
Apr10g1708 340 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 339 - -
Apr10g1708 340 CDD RING-H2_RNF111_like 292 335 - -
Apr10g1708 340 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 339 - -
Apr10g1708 340 SUPERFAMILY RING/U-box 285 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1708 Apr-Chr10 29933815 29937720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1708 37 338 C3H Transcription Factor Family AT4G26580 68.317 7.71e-143 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1708 - - gmx:100818715 567.385