Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1671 ATGAAGTGCTTCTTCTTCAAAGACAAGTGCAAATCGGCTCCTGAATTGCACAGCAAGAAGAAAAACCCCGCCTTCAACCGCCCCACCAACTCCACCGGTTCCGTTTCTTCGCCCAAGAGCGTCAAGGACTTGTACAGAGAGAGACAAAACATCTTCAGAGATTTCACTCTTGAAGAGCTTAGAGATGCCACCAATGGTTTCAACAGAATGCTCAAAATTGGCGAAGGTGGTTTTGGAAGTGTGTATAAAGGTTCCATTAAACCCCCTCAGCAACAGGGTGATCCAATTCTAGTTGCTATCAAAAGACTCAACACGCGTGGCTTCCAGGGTCATAAGGAATGGCTTGCGGAAGTTCAATTTCTGGGCATTGTTAATCACCCAAATTTGGTTAAGCTTTTGGGATACTGCTCTGTGGATGGAGAAAGAGGGATTCAACGATTGTTGGTGTATGAGTATATGCCCAATAGGAGCTTGGAACATCACCTTTTTGATAGATGTTTACCTGCACTGCCTTGGAAAACACGATTGGAGATCATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACATGAGGGACTTGAGATTCAGGTGATCTACCGAGATTTCAAATCCTCAAACGTTCTATTGGATGAGAATTTCCACCCAAAGCTCTCAGATTTCGGTCTTGCTAGAGAAGGACCACAAGGTGACCAGACTCATGTATCCACTGCGGTAGTTGGCACACAGGGATATGCTGCACCAGAGTACATTGAAACGGGTCATCTCAAAGTTCAGAGTGACATGTGGAGTTTTGGTGTTGTACTATATGAGATCCTCACAGGAAGGAGATCATTGGAGAGAAACCGTCCAACACCAGAACAAAAGCTATTAGATTGGGTCAAACAGTACCCTGCTGACAGTAGCAGATTCAGCATGATAATGGACACACGTCTGAGGAACCAATATTCTCTTGTTGCAGCTCGCAAAATAGCCAAATTGGCTGATAGCTGCTTGAAGAAGAATCCAGAAGATAGACCCTCCATGAGTCAGATAGTGGAAAGCTTGAAGCAAGCATTGCAATTGTCAGAAGCTTCAAACACTTCTCAAGATATTGCTGAATCTTCATCTCGGTCTAAAATGGTTAGGAAAAGTAAATAG 1137 0.4415 MKCFFFKDKCKSAPELHSKKKNPAFNRPTNSTGSVSSPKSVKDLYRERQNIFRDFTLEELRDATNGFNRMLKIGEGGFGSVYKGSIKPPQQQGDPILVAIKRLNTRGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSVDGERGIQRLLVYEYMPNRSLEHHLFDRCLPALPWKTRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDENFHPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTPEQKLLDWVKQYPADSSRFSMIMDTRLRNQYSLVAARKIAKLADSCLKKNPEDRPSMSQIVESLKQALQLSEASNTSQDIAESSSRSKMVRKSK* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1671 378 Gene3D Phosphorylase Kinase; domain 1 39 152 - -
Apr10g1671 378 MobiDBLite consensus disorder prediction 23 39 - -
Apr10g1671 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Apr10g1671 378 PANTHER OS01G0588500 PROTEIN-RELATED 17 373 - -
Apr10g1671 378 CDD STKc_IRAK 73 350 - -
Apr10g1671 378 Pfam Protein tyrosine and serine/threonine kinase 72 348 IPR001245 GO:0004672|GO:0006468
Apr10g1671 378 SUPERFAMILY Protein kinase-like (PK-like) 50 348 IPR011009 -
Apr10g1671 378 MobiDBLite consensus disorder prediction 354 368 - -
Apr10g1671 378 ProSitePatterns Protein kinases ATP-binding region signature. 73 101 IPR017441 GO:0005524
Apr10g1671 378 MobiDBLite consensus disorder prediction 354 378 - -
Apr10g1671 378 MobiDBLite consensus disorder prediction 17 39 - -
Apr10g1671 378 Gene3D Transferase(Phosphotransferase) domain 1 153 375 - -
Apr10g1671 378 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 17 373 - -
Apr10g1671 378 ProSiteProfiles Protein kinase domain profile. 67 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1671 Apr-Chr10 29418728 29421363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1671 3 348 Glycoside Hydrolase AT3G07070 43.137 1.20e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr10g1671 PK_Tyr_Ser-Thr 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1671 - K00924 gmx:100786966 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1671 10 29418728 29421363 Apr10g1671 10 29418728 29421363 ECH
Apr7g0748 7 14353683 14359561 Apr10g1671 10 29418728 29421363 PCT