Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1654 ATGGCGAACCCCGCCTCCTCTTCCTCCTCCTCCTCGCAGTTCACCTACTCCTCCGACGCCTCTTACTTCCCCACGCCCTTCCATCTCCAGCAACCGCCCACACACTACCCTCCTCCCTACGCGGCAGCGCCACTCCCCAACGGCAGCGCGTACCCGTTCCCGCAGGCGCAGCAGCTATTCCAGAGGGACGCGCAGACGATCACGCCGGAAGCCCTCGAGAACGTGAAGGCGGCGATCGCCAACAGCGACATCGAGCACAAGGCGGAGGCGAAGAAGAAAGCCGTTCCGCGGCGTGCAGCTGGGCAGTCGTGGGAGGATCCGTCGCTGGCGGAGTGGCCGGAGAACGACCACCGACTCTTCTGCGGGGATCTAGGGAACGAGGTAAACGACGACGTTTTGTCGAAAGCGTTCTCGCGTTTTCCTTCGTTCAACATGGCGAGGGTAGTGAGGGACAAGCGTTCGGGGAAAACGAAAGGGTACGGATTCGTGAGCTTTGCGGATCCCTCGGATCTGGCAGTTGCGCTTAAAGAGATGAATGGAAAGTACGTTGGGAACCGTCCAATTAAGCTTTGTAAGAGTAAGTGGAAAGAGAGAACCGATTTTGACGCTTTGGAGAAGCAGAAGAAGCAATCCAAGAAGAAGGTTAAATCTTCATCTAGGGTTGGAGTCTTGCATTATTGA 681 0.5712 MANPASSSSSSSQFTYSSDASYFPTPFHLQQPPTHYPPPYAAAPLPNGSAYPFPQAQQLFQRDAQTITPEALENVKAAIANSDIEHKAEAKKKAVPRRAAGQSWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDFDALEKQKKQSKKKVKSSSRVGVLHY* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1654 226 MobiDBLite consensus disorder prediction 30 45 - -
Apr10g1654 226 MobiDBLite consensus disorder prediction 25 48 - -
Apr10g1654 226 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Apr10g1654 226 SMART rrm1_1 118 191 IPR000504 GO:0003723
Apr10g1654 226 MobiDBLite consensus disorder prediction 206 226 - -
Apr10g1654 226 Gene3D - 63 201 IPR012677 -
Apr10g1654 226 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 189 IPR000504 GO:0003723
Apr10g1654 226 PANTHER RNA-BINDING PROTEIN 42-LIKE 34 225 - -
Apr10g1654 226 MobiDBLite consensus disorder prediction 88 108 - -
Apr10g1654 226 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 34 225 - -
Apr10g1654 226 SUPERFAMILY RNA-binding domain, RBD 101 198 IPR035979 GO:0003676
Apr10g1654 226 CDD RRM_RBM42 111 193 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1654 Apr-Chr10 29177037 29178340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1654 67 197 Eukaryotic Initiation Factors Gene Family AT1G71770 25.735 5.42e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1654 K25079 - zju:107412328 315.079