Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1650 ATGGAACTCAGTTTTAAGCACCAACTTGGCCTTGTTTGTGTCATACTGTGTCTCCCTGCATTGTGTAATTGTATGGAATATGTTACGAACTCCAGAGCAACATACTATAATACCCCTGATGGCTATGGGAATCCAAGGGGAGCTTGTGGTTTTGGTGAATATGGAAAGACAATAAACAATGGCAGTGTCGCAGCCGTGTCTGGGTTATGGAGGAATGGAGCTGGCTGTGGTACATGCTATCGGGTATGGTGCAAAATGCCACAATATTGCAATGCAAATGGAGTTCAAGTGGTGGCAACGGACTATGGTGAGGGAGACCGAACAGACTTCATCATGAGCCCACGCGCCTTTTCGAGTTTGGGACGCAACGCATTTGCATCTTCTAAGCTGATGAAATACGGTGTAGTGGACGTTGAATTCAAAAGGGTCCCTTGCAGATACAATGGCCATAGCATCATGCTTCATGTCCAAGAAAGCAGCAAAAACCCTGGCTACTTTGCTGTTCTGATTCTCAACGTAAATGGAATGTGCGACGTCACTGCTGTTGAAATTTTGCAGAAAGAGTATCAACGATGGGAGCCTATGCGCAGGGTCTATGGGGCAGTGTTTGACTTTGCTAACCCACCAAGGGGTGAAATCCGCTTGAGGTTTCAAATGGGCAATTGCGGTGGGGAAGGCTTTACATATTGGGTGTACCCCAAGATTGCTATTCCTGCTAATTGGAAGCCTGGAGCTACTTATGACGCCAAGGTTCAGCTTAATTAG 765 0.4641 MELSFKHQLGLVCVILCLPALCNCMEYVTNSRATYYNTPDGYGNPRGACGFGEYGKTINNGSVAAVSGLWRNGAGCGTCYRVWCKMPQYCNANGVQVVATDYGEGDRTDFIMSPRAFSSLGRNAFASSKLMKYGVVDVEFKRVPCRYNGHSIMLHVQESSKNPGYFAVLILNVNGMCDVTAVEILQKEYQRWEPMRRVYGAVFDFANPPRGEIRLRFQMGNCGGEGFTYWVYPKIAIPANWKPGATYDAKVQLN* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1650 254 Pfam Expansin C-terminal domain 152 220 IPR007117 -
Apr10g1650 254 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
Apr10g1650 254 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Apr10g1650 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Apr10g1650 254 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Apr10g1650 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Apr10g1650 254 SUPERFAMILY PHL pollen allergen 152 248 IPR036749 -
Apr10g1650 254 Gene3D - 146 250 IPR036749 -
Apr10g1650 254 Gene3D - 22 145 IPR036908 -
Apr10g1650 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 249 IPR007117 -
Apr10g1650 254 Pfam Lytic transglycolase 67 139 IPR009009 -
Apr10g1650 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Apr10g1650 254 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 254 - -
Apr10g1650 254 SMART dpbb_1 62 140 IPR007112 -
Apr10g1650 254 PANTHER EXPANSIN-B3 4 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1650 Apr-Chr10 29134498 29135999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1650 1 254 Expansin Gene Family AT4G17030 49.412 6.93e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1650 - - gmx:100779487 363.614