Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1649 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGACCACCTGAGAAGCCAGTACTTTGCAATGCCTGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAACTGTTGACCAGGAGGATCAAAGGGTTTCCAGGATAAAGAGCATGCCATTAAATAAGAACAAAGAAGTGAAATTGGTCAAACGAAAGCAGAACTATGACGATAATACTGCATCTGGCCTTGTCCTAGATTATAATCAAGGATTCCGAAAGGCTATGGATGAGGATACAAGCAATAGATCAAGCTCAGGATCCGCAATCTCTAACACGGAGAGCTGTGCTCAATTTGGTGGCATAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGCAGGTCGTCCAAAGGCATCCTCTGTTGAGAAGCTCACAAGAGACTTATGTACTATTCTTCATGAACAACAATCTTATTTTTCTGCATCTTCTGAAGAGGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCTATAGCTCGTGAAGAGGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAGTGCCTAATGAGTGAGGCATATTCATGGTCTGGTACCATTCCAATGTATGTTGATCACAGTGGCATTAACTTCTCATCTCATCATGGTGCTGAAAAGATCAGAAACTCTGCTGGCCAAATCATGAAACAAGAGCAGCTTAAAAGGGACAATTCTCAGATTGAAAAACTACATGTTCCTGGAAATCATGATTCACCACTGTGCTTAATAGATTTAAATGATGTAGTGAACTATGAGGAGTTTATGAGAAACTTGACAAATGAAGAGCAGCAGCAATTACTGAAGTATCTCCCTGTGGTTGATAATCTCAAACTTCCTGATAGCCTTGAAAACATGTTCAATAGCTTTCAATTCAAGGAGAACTTAACTTATTTTCAGCAACTTCTTGGGGAAGGTGTCTTTGATATCTCTTTGTTGGGGGCAAAACCTGAAGAATGGAAGATGTTGAAAAGGCTTGTGTTATCTAATCTGTTGAAATCAAAATGGGTAGAACACTATAATTTTCTCAAGAAATGTGAAAACAAAGCTGGAAAATCTATTGATCTAGGACCTACTGGTATGGGATCAAGTAATGTCGCAAATGCCAAGAGGATGCGCGGTAGCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGGAGCCCCAAAAGGGTGATCCTAAAGGCTGGCTCTCAGGGAGAAGATGTTGTAGAAGATGGCTGTAGCTTCAGTCCAAAAAGCATATTTTCTTTGCCCCGTGGTGGTAGTAGCTTGCACATGCTAGATTCTTTAAACTTTGTTGATGAGAGTTCTGATCAGGATCTGCTGTTAGATTTGCCATCTAACAGTTCATTTCCACAGGCAGAGCTACTACACCCAAATTTAGGCTTTGGTGCTCAAGTCAGCACCAGTAGCAGCTCAGTACACTCACCTGTTGCTCATCCTTGA 1629 0.4193 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETVDQEDQRVSRIKSMPLNKNKEVKLVKRKQNYDDNTASGLVLDYNQGFRKAMDEDTSNRSSSGSAISNTESCAQFGGIDASDLTGPAQSVVWDAMVPSKKRTCAGRPKASSVEKLTRDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSILIRHPSSIAREEESEASSLSVDNKQCLMSEAYSWSGTIPMYVDHSGINFSSHHGAEKIRNSAGQIMKQEQLKRDNSQIEKLHVPGNHDSPLCLIDLNDVVNYEEFMRNLTNEEQQQLLKYLPVVDNLKLPDSLENMFNSFQFKENLTYFQQLLGEGVFDISLLGAKPEEWKMLKRLVLSNLLKSKWVEHYNFLKKCENKAGKSIDLGPTGMGSSNVANAKRMRGSQNQNFPELKTTMRSPKRVILKAGSQGEDVVEDGCSFSPKSIFSLPRGGSSLHMLDSLNFVDESSDQDLLLDLPSNSSFPQAELLHPNLGFGAQVSTSSSSVHSPVAHP* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1649 542 Pfam Asx homology domain 288 369 IPR028020 -
Apr10g1649 542 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Apr10g1649 542 Gene3D - 284 393 IPR038108 -
Apr10g1649 542 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Apr10g1649 542 Gene3D - 3 88 IPR013088 GO:0006355|GO:0008270
Apr10g1649 542 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Apr10g1649 542 PANTHER OSJNBB0038F03.10 PROTEIN 1 542 IPR044589 -
Apr10g1649 542 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 542 - -
Apr10g1649 542 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Apr10g1649 542 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Apr10g1649 542 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Apr10g1649 542 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 408 IPR044867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1649 Apr-Chr10 29118494 29124766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1649 1 519 C2C2-Gata Transcription Factor Family AT4G17570 54.307 1.53e-158 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr10g1649 ASXH 3.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1649 - - gmx:100799745 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0732 7 14251725 14257967 Apr10g1649 10 29118494 29124766 PCT