Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1627 ATGACCCGGCGATGCTCACATTGCAGCCACAATGGACATAACTCCAGGACTTGCCCCAACCGTGGGGTCAAGCTCTTCGGGGTCCGATTAACCGACGGGTCGATCCGAAAGAGCGCTAGTATGGGTAATCTCACCCACTATGCTGGTTCCGGGTCTGGACCCCACCATACCGGGTCGACTAACCCGGGTTCTCCTGGTGAAACTCCCGATCACGCTGCCGCCGCCGACGGTTACGCTTCCGAGGACTTCGTTCCTGGTTCTTCTTCTAGCTCCCGTGAAAGAAAGAAGGGTGTTCCATGGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATATCAAGGACACCTACTCAAGTGGCCAGCCACGCTCAGAAATATTTCATCAGACAAAGCAATGTGCCCAGGCGTAAAAGACGGTCCAGCTTGTTCGACATTGTTGCAGATGATGCAGCTGACACTCCAATGGTACAGCAAGACTTCTTGTCAGCTAACCAGATACAGGCTGAAACAGAAGGCAATAACCCTTTGCCTGCTCCTCCTCCTCTTGACGAAGAGTGTGAATCCATGGATTCCACAAACTCAAATGATGGAGAGTCTGCCCCACCGAAGCCTGAAAACACACAATCATCTTATCCAGTGTTATATCCTGCATATTATTCGCCTGTGTTCCCGTTTCCTCTGCCCTACTGGTCAGGATACAGTCCAGAGCCCACCAAGAAGGAGACACATGAAGTGCTGAAGCCAACTGCTGTACATTCTAAAAGCCCAATCAATGTTGATGAACTTGTTGGCATATCAAAACTGAGTTTAGGAGACTCTATTGGTGACTCTGGCCCCTCCTCTTTGTCTCTAAAGCTTCTTGAAGAAGGACCCTCTAGACAGTCGGCTTTTCACGCAACGCCGGCATGTGGCAGTTCAAATATGAATGGCAGTGCCATCCATGCAGTTTAA 1002 0.498 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAGSGSGPHHTGSTNPGSPGETPDHAAAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVPRRKRRSSLFDIVADDAADTPMVQQDFLSANQIQAETEGNNPLPAPPPLDEECESMDSTNSNDGESAPPKPENTQSSYPVLYPAYYSPVFPFPLPYWSGYSPEPTKKETHEVLKPTAVHSKSPINVDELVGISKLSLGDSIGDSGPSSLSLKLLEEGPSRQSAFHATPACGSSNMNGSAIHAV* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1627 333 MobiDBLite consensus disorder prediction 209 225 - -
Apr10g1627 333 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
Apr10g1627 333 SMART sant 96 146 IPR001005 -
Apr10g1627 333 Gene3D - 98 150 - -
Apr10g1627 333 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
Apr10g1627 333 CDD SANT 99 144 IPR001005 -
Apr10g1627 333 PANTHER BNAC01G21010D PROTEIN 1 326 - -
Apr10g1627 333 MobiDBLite consensus disorder prediction 42 100 - -
Apr10g1627 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Apr10g1627 333 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Apr10g1627 333 MobiDBLite consensus disorder prediction 187 225 - -
Apr10g1627 333 MobiDBLite consensus disorder prediction 1 21 - -
Apr10g1627 333 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
Apr10g1627 333 MobiDBLite consensus disorder prediction 42 66 - -
Apr10g1627 333 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Apr10g1627 333 PANTHER TRANSCRIPTION FACTOR KUA1 1 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1627 Apr-Chr10 28854600 28859951 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr10g1627 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1627 - - ccaj:109807943 642.114