Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1623 ATGGCACCAAAGAATGATGGAGCTTCCAAAAGAACGATGAACAGAGGAACATGGACCCCAGAAGAAGACCGAAAGCTCTCTCAATGCATTCAAATTCATGGTGCTAAGAGGTGGAAGACTGTTGCTGTTAAATCAGGTTTAAATAGATGTGGGAAGAGTTGCAGGCTGAGATGGTTAAACTACCTGAGACCCAACATCAAGAGGGGAAACATATCAAATGAAGAAGAGGATTTGATTGTTAGGCTTCACAAACTTCTCGGAAACAGGTGGTCTTTGATAGCTGGGAGGCTTCCAGGACGAACAGACAATGAAATTAAGAATTACTGGAATTCACATTTGTGCAAAAAAGTGAATCAGAAAGAGGAGAAAGAAGAAACTTCCAAGACAACAGAAAAAACAATTCCCCAGAATCAGAACTATGGGGACAACAGTGCCACGTTCGAGAACGAGGAAACTATTATTGGAAGTGGCAATTCGGATGTTAGCTTTGATGTGAACGAATTCTTCAACTTCTCTGAAGGACCGTATGGGTATGATTGGGTGAACAAGTACTTAGAACTTGATCACATCCCTGAGAGCACACAAAAGATCTAA 594 0.4141 MAPKNDGASKRTMNRGTWTPEEDRKLSQCIQIHGAKRWKTVAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISNEEEDLIVRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQKEEKEETSKTTEKTIPQNQNYGDNSATFENEETIIGSGNSDVSFDVNEFFNFSEGPYGYDWVNKYLELDHIPESTQKI* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1623 197 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 196 - -
Apr10g1623 197 Gene3D - 72 142 - -
Apr10g1623 197 MobiDBLite consensus disorder prediction 119 144 - -
Apr10g1623 197 MobiDBLite consensus disorder prediction 1 20 - -
Apr10g1623 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Apr10g1623 197 CDD SANT 72 113 IPR001005 -
Apr10g1623 197 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Apr10g1623 197 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Apr10g1623 197 SMART sant 67 115 IPR001005 -
Apr10g1623 197 SMART sant 14 64 IPR001005 -
Apr10g1623 197 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr10g1623 197 Gene3D - 15 67 - -
Apr10g1623 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Apr10g1623 197 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 3 196 - -
Apr10g1623 197 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Apr10g1623 197 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Apr10g1623 197 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1623 Apr-Chr10 28781555 28783625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1623 8 179 MYB Transcription Factor Family AT3G13540 46.961 1.70e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr10g1623 Myb_DNA-binding 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1623 K09422 - gmx:100799575 311.997