Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1604 ATGATGGAAAGGCACAAATGCAAGCTTTGTTCAAGGTCATTTGCAAATGGTAGAGCCTTGGGTGGACACATGAAGGCTCACCTTGCTACTCTTCCCCTTCCACTTAAGCCTCAAACATTCACTGACTCTGCTAGTGCTACTTCTTTGTCATATTCCTCCTCTTCTTCTTCTTCAGAATCGGAACAGGAAGAAGACGAAGAACAAGTGGTGGCAAATAGAGAATCAGAGGAAAAGTCTCTGATTTACGGGTTAAGGGAGAATCCCAAGAAAAGCTTCAAGCTTGCAGATCCTGAGTTCTCTTCTTTTGCACCTGATACTGCTTCTGTGGTCCAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTGGCCAACGATCCAAGAGGAACCGCAAATCCAACGTGGCCTGTTTCATGGTGTCCACAACGCCACCACCCACCGACCCAGAGCCTCTTAGCTCCGTTTCTGACACTTCCCCTGAAGAAGACGTCGCCATGTGCCTCATGATGCTCTCTAGAGACAAGTGGAAGAGAAACAACAATGTGGTAGAGCAAAGACCAAACGGGAGCTTCAACAAAGAGATCAAGTTCAAGAGAGTTCGCGGGAACCTCCGCTGTCACAATTGTGGGAAATCCTTTCGATCTTCTCGAGCATTGGGTACTCACACAAGTATATGCTTTGAAGCAGGGCCTAAAGCTGAAGGAAATAATACTACTACTACTACTAATAGCAAAAGCAAGGTTTTTGAATGTCCGTTTTGTTATAAGGTGTTTGGGTCTGGTCAAGCACTTGGTGGACACAAGAGATCTCATCTTATCCCTTCTTCTTCAACTGCTAAATACAAAGAGAGCTTCATAGATCTCAACTTGCCAGCTCCGGTTGAAGAAGATGACCTTAGTGTTCTTTCTGATGCCTAA 918 0.4564 MMERHKCKLCSRSFANGRALGGHMKAHLATLPLPLKPQTFTDSASATSLSYSSSSSSSESEQEEDEEQVVANRESEEKSLIYGLRENPKKSFKLADPEFSSFAPDTASVVQDRESETESKNPTGQRSKRNRKSNVACFMVSTTPPPTDPEPLSSVSDTSPEEDVAMCLMMLSRDKWKRNNNVVEQRPNGSFNKEIKFKRVRGNLRCHNCGKSFRSSRALGTHTSICFEAGPKAEGNNTTTTTNSKSKVFECPFCYKVFGSGQALGGHKRSHLIPSSSTAKYKESFIDLNLPAPVEEDDLSVLSDA* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1604 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 271 IPR013087 -
Apr10g1604 305 SUPERFAMILY beta-beta-alpha zinc fingers 205 271 IPR036236 -
Apr10g1604 305 Gene3D Classic Zinc Finger 176 272 - -
Apr10g1604 305 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 305 - -
Apr10g1604 305 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 305 IPR044303 GO:0006355
Apr10g1604 305 MobiDBLite consensus disorder prediction 44 82 - -
Apr10g1604 305 MobiDBLite consensus disorder prediction 140 159 - -
Apr10g1604 305 Pfam C2H2-type zinc finger 248 272 - -
Apr10g1604 305 Pfam C2H2-type zinc finger 4 29 - -
Apr10g1604 305 SUPERFAMILY beta-beta-alpha zinc fingers 4 30 IPR036236 -
Apr10g1604 305 MobiDBLite consensus disorder prediction 103 134 - -
Apr10g1604 305 MobiDBLite consensus disorder prediction 44 58 - -
Apr10g1604 305 MobiDBLite consensus disorder prediction 111 125 - -
Apr10g1604 305 Pfam Zinc finger, C2H2 type 205 223 IPR013087 -
Apr10g1604 305 ProSitePatterns Zinc finger C2H2 type domain signature. 251 271 IPR013087 -
Apr10g1604 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Apr10g1604 305 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Apr10g1604 305 SMART c2h2final6 249 271 IPR013087 -
Apr10g1604 305 SMART c2h2final6 204 224 IPR013087 -
Apr10g1604 305 SMART c2h2final6 5 27 IPR013087 -
Apr10g1604 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 233 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1604 Apr-Chr10 28591581 28593172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1604 2 302 C2H2 Transcription Factor Family AT3G60580 35.015 3.00e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr10g1604 zf-C2H2_6 3.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1604 - - qsu:112028002 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0691 7 13767316 13768650 Apr10g1604 10 28591581 28593172 PCT