Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1576 ATGGATTTGAAGTCCCCTCATGTTCGTACTGATCCAGTTCCTGTTAACAAGTCAAGGCTTGGAAGGCATTCTAATATGCTAGCATATTCCCAGCAAGATTCACCACACTCTCATGGGAAGTACTCAAGAAGCAATTCAAAGAAAAGTATAGGGAGTCTTGATGACGTCAGGTCCAATGGTTGGTTGGATGCTATGAAGGCTTCTTCCCCTCCAAGGAAGAAGCTTCTTAAAGGTTTGAGCGCTCAGGTTGCTTCAATTGATTATGACTTTGAAGACTATTTTTCGTGGATGCTTGAATATCCTTCGGCACTAGACTCTTTTGAAAAAATCATTGACCTTGCAAAGGATAAGAAGATTGCCATGTTTCTAGATTATGATGGCACTCTTTCGCCAATAGTAGATGATCCAGATCGTGCCTTTATGTCCGAATCTATGCGTACAACTGTGAGAAGTGTGGCTAAGTATTTCCCCACAGCAATCATTTCTGGAAGAAGTCGTGACAAGGTTTTCGATTTAGTTAACCTAACGGAACTCTACTACGCTGGTAGTCATGGAATGGACATTATTGGCCCTGTTAGTGATACTTTGTCTAAAATTCACCCAAATTGTGTCAAGTCTTCTGACCAACAGGGAAAGGAGATAACTCTCTTTCAACCTGCAAGAGAATTCCTACCTATGATTGATGAGGTTTTTAGAACCCTCGTCGAGATTACTAAAGATATAGAAGGAGCAAAAGTTGAAAATCACAAGTTTTGTGTTTCTGTACATTACCGTAATGTAGAAGAAAGTAATTGGACAACGATTGGACAACTTGTCCATGACATCTTGAAAAACTATCCTCGTTTACGTTCAACTCATGGACGGAAGGTTTTAGAAATCCGTCCTGTGATTGACTGGAATAAAGGAAAAGCTGTTGAATTTTTAATTGAATCTCTAGGGTTAACTGATAGGAATGATGTGTTTCCCATCTACATTGGAGATGATAAAACTGATGAAGATGCATTCAAGGTGCTGCGGGAAAGCAATCAAGGTTGTGGGATTTTGGTTTCGTCAGTTAGGAAAGAAAGCAGTGCAATTTACTCTCTCCGAGACCCCAACGAGGTCATGAAATTTCTCCAACTCTTGGTGAATTGGAAGAGGCATCAAGAAAGGAAGCATGGGAAGAAGTAA 1170 0.4034 MDLKSPHVRTDPVPVNKSRLGRHSNMLAYSQQDSPHSHGKYSRSNSKKSIGSLDDVRSNGWLDAMKASSPPRKKLLKGLSAQVASIDYDFEDYFSWMLEYPSALDSFEKIIDLAKDKKIAMFLDYDGTLSPIVDDPDRAFMSESMRTTVRSVAKYFPTAIISGRSRDKVFDLVNLTELYYAGSHGMDIIGPVSDTLSKIHPNCVKSSDQQGKEITLFQPAREFLPMIDEVFRTLVEITKDIEGAKVENHKFCVSVHYRNVEESNWTTIGQLVHDILKNYPRLRSTHGRKVLEIRPVIDWNKGKAVEFLIESLGLTDRNDVFPIYIGDDKTDEDAFKVLRESNQGCGILVSSVRKESSAIYSLRDPNEVMKFLQLLVNWKRHQERKHGKK* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1576 389 Pfam Trehalose-phosphatase 122 365 IPR003337 GO:0003824|GO:0005992
Apr10g1576 389 MobiDBLite consensus disorder prediction 23 52 - -
Apr10g1576 389 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE F-RELATED 5 385 - -
Apr10g1576 389 MobiDBLite consensus disorder prediction 1 52 - -
Apr10g1576 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 5 385 IPR044651 GO:0004805|GO:0005992
Apr10g1576 389 TIGRFAM T6PP: trehalose-phosphatase 117 376 IPR003337 GO:0003824|GO:0005992
Apr10g1576 389 CDD HAD_TPP 120 370 - -
Apr10g1576 389 Gene3D - 119 206 IPR023214 -
Apr10g1576 389 Gene3D - 219 389 IPR023214 -
Apr10g1576 389 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 121 339 IPR006379 -
Apr10g1576 389 SUPERFAMILY HAD-like 120 379 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1576 Apr-Chr10 28240782 28243446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1576 106 375 Trehalose Biosynthesis Gene Families AT1G70290 26.573 3.64e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1576 K01087 - jre:109011403 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1576 10 28240782 28243446 Apr10g1576 10 28240782 28243446 ECH