Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1572 ATGTCATCCTCTTCCACCACATTATCACTGGACCACCTTCCCCCTTCCGAGCAGCTTTGTTATGTTCATTGCAACATTTGTGACACTGTCCTCGCTGTAAGTGTTCCCTGCACTAGCTTGTTCAAGACCGTCACTGTCCGATGCGGCCATTGCACTAACCTCCTGCCAGTCAACATGCGCGGCTTGCTTCTGCCATCGCACAGTCAATTTCATTTGGGTCACTCTTTTTTCTCCCCTTCTCATAGCCTTCTGGAGGAGATGCCAAACCCTTCTCCAAATTTTCTTATGAACCAGACAAATTTAAGTGCAGCAAATGAGTTCTCTATGCCTGCTAGGACTGTAGCTGATGAGCTTCCGCGGCCACCGATCATAAATAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCGTACAACCGCTTTATTAAGGACGAGATCCAACGCATCAAATCTGTCAATCCAGATATAACCCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGAAGGGGAGGAGGTTCTTATGAAAGATGGGTTTTATGCTTCGGCTAATGTTGGTGTTTCACCGTACTAA 648 0.4846 MSSSSTTLSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSHSQFHLGHSFFSPSHSLLEEMPNPSPNFLMNQTNLSAANEFSMPARTVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQEGEEVLMKDGFYASANVGVSPY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1572 215 PANTHER PROTEIN YABBY 4 1 213 - -
Apr10g1572 215 SUPERFAMILY HMG-box 123 172 IPR036910 -
Apr10g1572 215 PANTHER PROTEIN YABBY 6-RELATED 1 213 IPR006780 GO:0007275
Apr10g1572 215 Pfam YABBY protein 15 179 IPR006780 GO:0007275
Apr10g1572 215 Gene3D High mobility group box domain 124 187 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1572 Apr-Chr10 28177477 28180364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1572 26 213 C2C2-YABBY Transcription Factor Family AT4G00180 61.244 6.90e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Apr10g1572 YABBY 4.6e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1572 K25796 - gmx:100798441 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1572 10 28177477 28180364 Apr10g1572 10 28177477 28180364 ECH