Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1560 ATGGATTCTGCAAAGAAAGATGGCGCAAGCCACATCCCATCCGAGCCGGAGCTGTGTAGCAACAATTGTGGCTTCTTTGGCAGTGCTGAGAACCAAAACCTCTGCTCCAAATGCTACAGGGATCTGTGTATTGAAGAGAAGCACTCTGCCACAGAGCCGTCTCTAGACTTAACTCTTGCTGTGGGAAAGCCATCCTCGTCGGCTGAGCCATCATCGAGCCAAGCTGAGCCCTCAAAAGAGGTGGAACGGTGTGCAAGTTGCTTCAAGAAAGTGGGGTTAACCGGGTTTGTGTGCAAATGTGGGGTCACCTTTTGTGGGACACATCGCTACCCAGAGAAGCACCAATGCTCTTATGATTTCAAAACTGCTGGCCGAGATGCAATTTCAAAGGCAAATCCTGTCATCAAGGCTGATAAGGTTCAAAGGTTTTAG 432 0.4931 MDSAKKDGASHIPSEPELCSNNCGFFGSAENQNLCSKCYRDLCIEEKHSATEPSLDLTLAVGKPSSSAEPSSSQAEPSKEVERCASCFKKVGLTGFVCKCGVTFCGTHRYPEKHQCSYDFKTAGRDAISKANPVIKADKVQRF* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1560 143 ProSiteProfiles Zinc finger A20-type profile. 13 47 IPR002653 GO:0003677|GO:0008270
Apr10g1560 143 SMART AN1_Zf_4 84 121 IPR000058 GO:0008270
Apr10g1560 143 MobiDBLite consensus disorder prediction 55 80 - -
Apr10g1560 143 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 18 53 - -
Apr10g1560 143 Pfam AN1-like Zinc finger 84 120 IPR000058 GO:0008270
Apr10g1560 143 SMART A20_3 16 40 IPR002653 GO:0003677|GO:0008270
Apr10g1560 143 ProSiteProfiles Zinc finger AN1-type profile. 78 124 IPR000058 GO:0008270
Apr10g1560 143 MobiDBLite consensus disorder prediction 60 79 - -
Apr10g1560 143 Pfam A20-like zinc finger 18 40 IPR002653 GO:0003677|GO:0008270
Apr10g1560 143 Gene3D - 61 139 IPR035896 -
Apr10g1560 143 SUPERFAMILY AN1-like Zinc finger 69 138 IPR035896 -
Apr10g1560 143 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 143 - -
Apr10g1560 143 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1560 Apr-Chr10 28066525 28066956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1560 11 143 C2H2 Transcription Factor Family AT3G52800 40.000 1.03e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1560 - - vun:114175511 186.037