Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1558 ATGGATCCAATCACAGCACACGGGCATTCTCTTCCTCCTCCTTTCCACACAGCAAGAGATCTCCACCTGCACCACCAGCCACAGCAACATCAACATCAATTCCAAACTCTAAACCAAGCCACAGAAGATGAGCAAAGCGGAAGCAGTGGAGGCCTAAACCTAACCCAGAAAAGGGAACGTGAAGAAACAAGCAACAACAACAACAGTAGCGAAGGAAAAGAACTTGCAGGTGAAGGTGAGATATCAAGAAGGCCTCGAGGAAGACCAGCTGGGTCAAAGAACAAACCGAAACCACCCATTATCATCACACGTGACAGTGCTAATGCTCTAAGAACCCACATGATGGAAGTAGCAGATGGTTGTGACATCGTTGAAAGCGTGTCAAACTTCGCTGGAAGGCGCCAAAGAGGGGTTTGCATCATGAGTGGCACTGGAACAGTCACCAACGTTACTCTCAGGCAACCGGCTTCTTCCGGTGCTGTTGTCACTCTTCACGGAAGGTTCGAGATCTTGTCCCTTTCTGGGTCGTTTTTGCCGCCACCGGCTCCACCGGCTGCTTCCGGTTTGACCATTTATTTGGCGGGTGGACAAGGACAGGTTGTAGGAGGAAGTGTTGTGGGCACACTGGTTGCTTCGGGGCCTGTGGTGATTATGGCTGCTTCGTTTAGCAACGCTGCTTATGAGAGACTTCCTTTGGAAGATGAGGATCCTTCGATGCCAATGCAAGGAGGTTCAGTTGGATCTCCTAGTGCAAGTGGTGTTGCTCAACAACAGCTTTTGGGAGGAGATGCTACTGCTCCACTTTTCCATGGTTTGCCTCCTAATCTTCTCAATTCTATTCAAATGCCATCTGAAGCATTTTGGCCATCTGCACGCCCTCCATACTAA 888 0.4966 MDPITAHGHSLPPPFHTARDLHLHHQPQQHQHQFQTLNQATEDEQSGSSGGLNLTQKREREETSNNNNSSEGKELAGEGEISRRPRGRPAGSKNKPKPPIIITRDSANALRTHMMEVADGCDIVESVSNFAGRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDEDPSMPMQGGSVGSPSASGVAQQQLLGGDATAPLFHGLPPNLLNSIQMPSEAFWPSARPPY* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1558 295 MobiDBLite consensus disorder prediction 28 54 - -
Apr10g1558 295 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 224 IPR005175 -
Apr10g1558 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 295 IPR014476 GO:0003680
Apr10g1558 295 PIRSF ESCAROLA 17 294 IPR014476 GO:0003680
Apr10g1558 295 MobiDBLite consensus disorder prediction 1 101 - -
Apr10g1558 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 7 295 - -
Apr10g1558 295 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 236 - -
Apr10g1558 295 CDD DUF296 111 222 IPR005175 -
Apr10g1558 295 Gene3D - 110 238 - -
Apr10g1558 295 ProSiteProfiles PPC domain profile profile. 107 243 IPR005175 -
Apr10g1558 295 MobiDBLite consensus disorder prediction 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1558 Apr-Chr10 28052525 28053412 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1558 1 295 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 54.734 4.43e-88 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1558 - - gmx:100807581 428.328