Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1533 ATGGGGAGGCAACCTTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACTGCTGAAGAAGACAAGAAACTCATCAACTTCATTCTCACCAATGGCCAGTGTTGTTGGCGAGCTGTGCCTAAGCTTGCTGGCCTTAGGCGTTGTGGCAAAAGTTGTCGTCTTCGTTGGACTAATTATCTTCGCCCTGACTTAAAGAGAGGCCTTCTCACTGAAGCAGAGGAGCAACTTGTTATTGATCTTCATGCCCGTCTTGGCAACAGATGGTCCAAAATTGCTGCCAGGTTACCCGGAAGAACAGACAATGAGATTAAAAATCATTGGAACACTCATATCAAGAAAAAGCTCCTTAAGATGGGTATTGATCCCGTTACTCATGAACCTCTCAATAAACAAGCAGCATCCAAGGATAGTTCATCATACCCTGCAGATAATTTGCCAAAACCTAGCAATGACCTTGATCAGGTCAAGGAAACTGATCATGGGGTTCTGAACTCAGAGGAGAATTCAAGTTCATCCTTAGCTGAAAATTCTTCTGGGGAAGAATCCCTTTTGCCTGATAGCATTTGTAGTGAGGAATCTCTAATAAACACCCTGTGGCTGGATGAAACTCCTTTGGTGGAAGCATTATGGGACAATACACCAAAGGCAGATAATGACATGGCTTTGCTTCCATCTTGGGAGGATAATTGTGCTTGGTTATTGGATTGTCAAGACTTTGGTATTCATGATTTTGGGTTTAATTGTTTCAACGAAATAGAATCAAATGCACTGCAAACTATAGGAATAAAGGAAGAGGAGCATTAG 807 0.4275 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQAASKDSSSYPADNLPKPSNDLDQVKETDHGVLNSEENSSSSLAENSSGEESLLPDSICSEESLINTLWLDETPLVEALWDNTPKADNDMALLPSWEDNCAWLLDCQDFGIHDFGFNCFNEIESNALQTIGIKEEEH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1533 268 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr10g1533 268 CDD SANT 16 61 IPR001005 -
Apr10g1533 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr10g1533 268 MobiDBLite consensus disorder prediction 130 185 - -
Apr10g1533 268 MobiDBLite consensus disorder prediction 165 185 - -
Apr10g1533 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr10g1533 268 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Apr10g1533 268 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr10g1533 268 CDD SANT 71 112 IPR001005 -
Apr10g1533 268 Gene3D - 12 67 - -
Apr10g1533 268 PANTHER PROTEIN ODORANT1-LIKE 2 252 - -
Apr10g1533 268 Gene3D - 71 142 - -
Apr10g1533 268 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr10g1533 268 SMART sant 13 63 IPR001005 -
Apr10g1533 268 SMART sant 66 114 IPR001005 -
Apr10g1533 268 MobiDBLite consensus disorder prediction 131 146 - -
Apr10g1533 268 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr10g1533 268 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1533 Apr-Chr10 27791077 27793058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1533 1 260 MYB Transcription Factor Family AT4G12350 56.794 8.78e-102 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr10g1533 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1533 K09422 - gmx:100786965 469.929