Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1524 ATGGTGAGGGGAAAAACTCAGATGAAACGCATCGAAAACGAGACAAGCAGGCAAGTAACTTTCTCGAAGAGAAGGAATGGGTTGCTTAAGAAAGCCTTTGAGCTTTCAGTGTTGTGTGATGCTGAAGTCGCACTCATCATCTTCTCCACTAGAGGGAAGCTCTATGAGTTCTCCAGTTCAAGATACTTCAGTATAAACAAAACAGTTGAACGCTATCAAAGGAAAATCAAGGACCTGGGTCTCAGCACTAAAGGAATCCAGGAAAATACACAGCATGTAAAAGACGGAGACATCAGCATGGTAAAGAAGTTAGAGCACCTAGAAGTTTCTAAAAGGAAGCTTTTGGGGGAAGAATTGGATACATGCAGTTTGGACGAATTACAGCAGCTAGAGAACCAGCTCGAACGCAGCTTAAACAAAATTAGGGCAAGAAAGAATCAATTGTTCAGGCAGCGAATCGAGAAGCTAAAGGAAGAGGAAAAGTTCCTACTAGAAGAAAATAAACGCTTACGCCAGCAGTGTCAGATTGAACGACAGCGTTCTTTCAGTATTCAAGATGTGGAACTCGTAACAGAAAAGAGGGGAGAAGAGGTGGAGACGGAGTTATTCATAGGTCGACCTGAGAGACGAATGCCGTAA 639 0.4304 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSSSRYFSINKTVERYQRKIKDLGLSTKGIQENTQHVKDGDISMVKKLEHLEVSKRKLLGEELDTCSLDELQQLENQLERSLNKIRARKNQLFRQRIEKLKEEEKFLLEENKRLRQQCQIERQRSFSIQDVELVTEKRGEEVETELFIGRPERRMP* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1524 212 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Apr10g1524 212 PANTHER MADS-BOX PROTEIN SOC1 1 208 - -
Apr10g1524 212 Coils Coil 124 180 - -
Apr10g1524 212 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr10g1524 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr10g1524 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr10g1524 212 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Apr10g1524 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr10g1524 212 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Apr10g1524 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr10g1524 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr10g1524 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr10g1524 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr10g1524 212 Pfam K-box region 90 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr10g1524 212 PANTHER MADS BOX PROTEIN 1 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1524 Apr-Chr10 27691890 27701501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1524 1 210 MADS-box Gene Family AT4G22950 60.748 1.44e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr10g1524 K-box 3.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1524 - - gmx:100805260 317.005