Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1523 ATGCAAGAACCGGGGTTGGGAATGGGAATGGGAATGATAAGCGGAGAAATGTCATTGTCAGGAGGCGGCGACCACCACCACCATCACCGTCAAGTGAAGGCAGAGATAGCCACTCACCCTCTTTATGACCAGCTTCTCGCTGCACACGTGTCCTGCCTCCGCGTCGCCACTCCCATTGACCACTTGCCACTCATCGACGCTCAGTTATCTCAATCCCAACATCTCCTACGCTCTTATGCCTCTCACCATTCCCTTTCCCTCTCACCCCATGACCGACAAGAACTTGACAACTTCATGTCACAGTATTTGATTGTGTTGTGTACGTTCAAAGAGCAGCTTCAGCAACATGTCAGAGTGCACGCCGTGGAGGCTGTCATGGCCTGCCGTGATATTGAAAGTACCTTGCAAGCTCTAACCGGTGTCAGTTTGGGAGAAGGAACAGGTGCAACAATGTCAGATGATGAAGATGAGATGCAAATGGATGTGTCTTTAGACCAGTCTAGCGCTGAAGGGCATGACATGATGGGATTCGGTCCCTTACTTCCTACAGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAGGAACTTAAGATTGAGCTCAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTTAGGGAGGAAATATTAAGGAAACGAAGGGCTGGGAAATTACCAGGTGACACAACATCGGTTTTGAAGGCCTGGTGGCAGCAACATGCCAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGATTGCAGCTGAAGCAAATCAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTACTTCTCTGAAGTCCAAGCGCAAGAGAGAGTATTCCCACTAA 894 0.4855 MQEPGLGMGMGMISGEMSLSGGGDHHHHHRQVKAEIATHPLYDQLLAAHVSCLRVATPIDHLPLIDAQLSQSQHLLRSYASHHSLSLSPHDRQELDNFMSQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGTGATMSDDEDEMQMDVSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKREYSH* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1523 297 Pfam KNOX2 domain 88 139 IPR005541 GO:0003677|GO:0005634
Apr10g1523 297 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 293 - -
Apr10g1523 297 SMART KNOX2_2 85 140 IPR005541 GO:0003677|GO:0005634
Apr10g1523 297 ProSiteProfiles ELK domain profile. 196 216 IPR005539 GO:0003677
Apr10g1523 297 SMART HOX_1 218 283 IPR001356 GO:0003677
Apr10g1523 297 Pfam Homeobox KN domain 236 275 IPR008422 GO:0003677|GO:0006355
Apr10g1523 297 SMART KNOX1_2 30 74 IPR005540 GO:0003677|GO:0005634
Apr10g1523 297 CDD homeodomain 219 280 IPR001356 GO:0003677
Apr10g1523 297 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 293 - -
Apr10g1523 297 Pfam KNOX1 domain 32 73 IPR005540 GO:0003677|GO:0005634
Apr10g1523 297 ProSiteProfiles 'Homeobox' domain profile. 216 279 IPR001356 GO:0003677
Apr10g1523 297 Gene3D - 215 290 - -
Apr10g1523 297 SUPERFAMILY Homeodomain-like 218 283 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1523 Apr-Chr10 27680787 27685533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1523 1 292 Homeobox Transcription Factor Family AT1G62990 75.503 5.95e-163 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr10g1523 KNOX2 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1523 - - gmx:100803130 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1523 10 27680787 27685533 Apr10g1523 10 27680787 27685533 ECH
Apr10g1523 10 27680787 27685533 Apr7g0629 7 12964691 12971090 PCT