Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1516 ATGAACATTATCGGACATTTATTCGACGAATCGAACAGCGGACACAAGTCGGAGTGCTACTCATGTTCATCACCCGAAACCAGCTTCTCTAACCTTCCAAACACTGCTAACTCTGACGAGGAAGCGCTTACATTAGCGTCGGCTCGACCCAAGAAACGCGCGGGGCGTCGAATATTCAAGGAGACGAGGCACCCCGTGTACCGAGGAGTGCGGCGGAGGAACAACAACAGATGGGTCTGCGAGGTGCGTGTTCCCAACGACAAGTCTACCAGGATTTGGCTGGGAACATACCCAACGCCTGAAATGGCCGCACGTGCGCACGACGTGGCGGCGCTTACGCTTCGGGGAAAGTCGGCTTGCCTCAACTTCGCCGATTCGGCGTGGCGGCTTCCTTTGCCGGCGTCGACCAATGCGAAGGAGATAAGGAGAGTGGCGGCGGAGGCTGCGATGGTATTTGCCGGTGAGCATGAGAGTGTGAATAACGGCGTTGCTGATTGTGAAGTTAACAGCAGTGGCGTCAGCGTAAGTGAAGATGGCAATACTGGAGCCTTGCAGGGATTGTCACTGCATAATGTGGATGAAGTGCCACGTGTAACGAAATTTGAGGACCTGCATGATTGGCTTCGGTGTATGGCTGATGAGCCTTTAAGGTCTCCTCCTCCTTCTGTAAGATACAGTAGGGACTGGGACGTTGTGGAAGATGATGCTGAGGTGTCCTTGTGGACCTTCACCGTCTGA 738 0.5407 MNIIGHLFDESNSGHKSECYSCSSPETSFSNLPNTANSDEEALTLASARPKKRAGRRIFKETRHPVYRGVRRRNNNRWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALTLRGKSACLNFADSAWRLPLPASTNAKEIRRVAAEAAMVFAGEHESVNNGVADCEVNSSGVSVSEDGNTGALQGLSLHNVDEVPRVTKFEDLHDWLRCMADEPLRSPPPSVRYSRDWDVVEDDAEVSLWTFTV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1516 245 Pfam AP2 domain 65 116 IPR001471 GO:0003700|GO:0006355
Apr10g1516 245 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 245 - -
Apr10g1516 245 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Apr10g1516 245 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 245 IPR045277 GO:0003700
Apr10g1516 245 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Apr10g1516 245 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Apr10g1516 245 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Apr10g1516 245 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Apr10g1516 245 CDD AP2 67 126 IPR001471 GO:0003700|GO:0006355
Apr10g1516 245 SUPERFAMILY DNA-binding domain 66 126 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1516 Apr-Chr10 27622399 27623476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1516 35 243 AP2-EREBP Transcription Factor Family AT5G51990 50.000 1.75e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr10g1516 AP2 6.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1516 - - pvu:PHAVU_003G212800g 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1516 10 27622399 27623476 Apr10g1516 10 27622399 27623476 ECH
Apr10g1516 10 27622399 27623476 Apr7g0622 7 12869631 12870380 PCT