Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1505 ATGGCGACGACAAGGTCACCGAACCGTTCTTCCGAGGACGCCGCCGATCCAACGCCGTTGATCGCGTCTTCCTCCGACGACTCCAATTCCGGTCGCCGAATCCTCCACCGGCCGAGTCTCCGACAGGCGGCGCAGTTCCTTCGACAGGCGAGTGGGCGGAGGTTGATGCGCGAACCGTCTATGGTGGTGAGGGAGGCGGCGGCGGAGCAATTGGAGGAGAGGCAGAGCGATTGGGCCTACTCGAGGCCCGTCGTGGTTCTCGACATTCTCTGGAACTTCGCATTCGTCGTTGCAGCCGTTACGGTCTTGGTTTTGGGTCGCAGTGAGAATCCGAACGTGCCTCTTCGGTTGTGGATTGTAGGTTACGCTTTGCAGTGCGTGCTTCATGTTGTGTGCGTTTGCGTCGAGTACCGGAGGCGCATCCGCCGCCGGGAACTGTCAGACGCCAACGCCGCCGTTGCAGTTGGTGGCAGTGCGGATTTGAGTGTGGATGGTTCTGGACAGTATGTATCGTTGGCGCAGTTAGATGACGATGGAATGAGTACAGCGAAGCATTTGGAATCTGCCAACACAATGTTTTCGTTTATTTGGTGGGTTGTCGGATTCTATTGGGTGTCAGCTGATAGTCAAGCTTTAGTCCAAGATTCTCCTCAGCTTTACTGGTTATGTATAGTCTTCCTGGGTTTTGATGTCTTCTTTGTCGTTTTCTGTATTGCGCTGGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCGTGTATAATTGCACTCCTTTATGCAGTTGCAGACCAGGAAGGGGCCTCAAAAGAAGACATTGAGAAGTTGTCAAAATTCAAGTTCCAAAGAACTGAAACTAATGAGAAACTTACACAAGGACCTGTTGGAGGAATAATGACTGAATGCAATTCTGATTCTCCTATTGAACATGTTCTTTCTGATGAGGATGCGGAATGTTGCATATGCCTTTCTGCTTATGATGATGGGGTTGACCTTCGACAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGACAAATGGCTGTATATAAATGCTACTTGCCCTCTCTGCAAGTATAACATCTTGAAAAGTAGCAGTCATGGTCAAGACGAAGTGTAG 1125 0.5031 MATTRSPNRSSEDAADPTPLIASSSDDSNSGRRILHRPSLRQAAQFLRQASGRRLMREPSMVVREAAAEQLEERQSDWAYSRPVVVLDILWNFAFVVAAVTVLVLGRSENPNVPLRLWIVGYALQCVLHVVCVCVEYRRRIRRRELSDANAAVAVGGSADLSVDGSGQYVSLAQLDDDGMSTAKHLESANTMFSFIWWVVGFYWVSADSQALVQDSPQLYWLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEKLSKFKFQRTETNEKLTQGPVGGIMTECNSDSPIEHVLSDEDAECCICLSAYDDGVDLRQLPCGHHFHCACVDKWLYINATCPLCKYNILKSSSHGQDEV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1505 374 MobiDBLite consensus disorder prediction 1 35 - -
Apr10g1505 374 Pfam Ring finger domain 318 360 IPR001841 -
Apr10g1505 374 ProSiteProfiles Zinc finger RING-type profile. 319 360 IPR001841 -
Apr10g1505 374 CDD RING-H2_RNF111_like 318 362 - -
Apr10g1505 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 373 IPR013083 -
Apr10g1505 374 SUPERFAMILY RING/U-box 309 366 - -
Apr10g1505 374 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 374 - -
Apr10g1505 374 SMART ring_2 319 359 IPR001841 -
Apr10g1505 374 MobiDBLite consensus disorder prediction 1 29 - -
Apr10g1505 374 PANTHER TARGET OF ERK KINASE MPK-1 3 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1505 Apr-Chr10 27487013 27496087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1505 18 369 C3H Transcription Factor Family AT1G68070 49.580 9.50e-121 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1505 - - gmx:100779757 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1505 10 27487013 27496087 Apr10g1505 10 27487013 27496087 ECH
Apr10g1505 10 27487013 27496087 Apr7g0611 7 12678807 12684654 PCT