Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1492 ATGGTTTCGACGAGGCGCAGTGGATCTCTCTCTGCTAGCAATACCAAAAGATCTTCCTCCTCCGAAGATAAACCTCCTTCGCCTAAGCGTCAAAAGGTCGACAATGGCGCTTCTTCGGAGAAATCGGTGCCGCCGGCGGAGAATTCCAAGGAGTTATGTACTCCGGAGCCCGCGCCTGATCCCGGAGAATGTGGCTCTGGCGATGCTCAGGTCGCCGGAGCGGCTGCCGCAGATGGATTGAGCCCTGCCAAGGGTGATGCTACGCCGGCTGTGCCTGTGACGGCGCCGATTGCTGATACCACTTGTCCATCGTTCTCTGCGTGGAGTATATATCAGAAACAAAATCCGAATATCGAAGCAGGTCCATGGTGTAGGTTTTTGTCGCAGTCTGCTCAGAATCCAAATGTTGCTGTTTGCACACCCAATTTCACTATTGGTTCTAATAGGAGTTGCAACTTTCTACTGAAGGATCAAACTATAAGTGGGAATTTGTGCAAAATCAAACATACGCAGCGCGAGGGAAGTGCTGTAGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTTGTAAATGGGACGCTTGTCAAGAAGAATACCAGCTGTGTGCTTAACTCGGGTGATGAGGTGGTTTTTGGTGTGATGGGAAATCATTCTTATATTTTCCAGCAACTAAATACTGAGGTTGCAGTTAGGGGTGCAGAAGTTCAAAGGAGAAGTGGAGACCCTTCGGCTGTCACTGGGGCCTCTATTTTGGCTTCTCTTTCTAACCTCAGACAGGACCTTACAAGATGGAAATCTCCCTCTCAGACCTCGAGTAAACCTTACCAGGGTACCGATGTCTCTAGTCATTCTGTTCTTCATGATTGTACAGACATTGAGCTGGATGGCTCAGAATCAGCTCCAAATGTGCGGAGTGATAAAGCAGCTGATGTCGGAACAAGCGACAAGAATTCAACAATGGATTGTGATCCAGATGCTGACGCAGAGGCAGGCAATGTAAAATTCTCTGGGGTGAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCGACCTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTATTGGAAGAAAGAAATGGGACGCGGGATATGCAGGCTGCATCGACTTCGGGTACATCTGTGCGCTGTGCTGTGTTTAAAGAAGATGTCCATGCTGCTATACTGGATGGAAAAGAAATAGATGTGTCTTTTGAGAGTTTCCCTTACTATTTAAGTGAGAATACAAAAAATGTCCTGGTGGCTGCTTGCTTTATGCACCTCAAGCATAAAGAACACGAAAAGTTTACTGCAGATCTTACAACCATAAACCCTCGCATTCTCCTTTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGAGCTAAGTTGCTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGTTACTCAAAGATGGATCTAATGCTGAAAAATCCTCCAGCTGCACAAAACAAAATCCTACAGTCACGGACATGGCTAGGAACATGGAACCATTAGCTAGTGAAACAGAGGCACCTAGCTCTTCAAATGCCCCTACACCAAATGGTTTAGAGTCTCAACCTAAGTTGGAAACTGATACCATGCCATCCACCTCTGGAACAGCTAAAAGTTGTGTGTTCAAACTAGGTGATAGGGTGAAGTTTAGCTGTTCATCTTCTACTGGCTTATATCAGACTTCTTCAAGGGGCCCACCTAATGGAAGTCGAGGGAAGGTTGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAGCCAATACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACTGATCTTCGTTTGGAAAACAGTGGTGTGGAAGAACTGGACAAATTACTCATTAATTCATTGTTTGAGGTTGTTTTCAGTGAGAGCAGAAGTGCACCATTCATTTTGTTCATGAAAGATGCGGAGAAGTCTATTGTAGGAAATGGAGATCCATATTCATTTAAAAGTAAGCTTGAAAATCTTCCAGACAATGTGGTTGTAATAGGTTCACATACTCAAACTGACAGTCGCAAGGAGAAGTCACATCCTGGTGGTTTGCTTTTCACAAAATTTGGTAGTAATCAGACTGCCCTTCTTGACTTGGCTTTCCCGGATAGTTTTGGACGATTGCATGACAGGGGGAAGGAAGTCCCAAAGCCAAACAAAACTTTGACTAAGCTTTTCCCAAATAAAATTTCAATTCACATGCCGCAGGATGAGGCTCTTCTAGCATCTTGGAAGCAGCAACTAGATCGAGATGTTGAGACTCTTAAAATCAAAGGAAATTTACATCACTTGCGCACAGTTTTGGGCCGATGCGGAATGGAATGTGAAGGACTTGGGACCTTGTGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAGAAGATAGTTGGTTGGGCTTTAAGCCACCACCTCATGCAGAATTCTGAAGCTGATCCTGATTCAAAGCTTGTATTGTCATGTGAGAGCATCCAGTATGGAATTGGGATCTTGCAGTCTATCCAGAATGAATCCAAGAGTCTAAAGAAATCTCTTAAGGATGTCGTAACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAGTGACATCGATGTTACTTTTGATGACATTGGAGCTCTGGAAAATGTCAAGGATACATTGAAGGAGTTGGTGATGCTTCCTTTACAGCGGCCTGAGCTGTTTTGCAAAGGGCAATTAACCAAGCCATGCAAAGGTATCCTATTATTTGGTCCCCCTGGAACTGGTAAAACAATGCTTGCAAAGGCAATTGCTACTGAAGCTGGAGCAAACTTCATCAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATACGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTTCTCCTAGTGTTATATTTGTTGACGAGGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGTACAAAGGATACTGAGCGAGTTCTTGTGCTGGCAGCCACTAACAGGCCTTTTGACCTAGATGAGGCCGTCATAAGGAGGCTGCCACGAAGATTGATGGTTAATTTGCCAGATGCTGCTAATAGAGCAAAAATATTGAAAGTTATACTGGCAAAAGAGGAATTGTCTCCTGATGTTGATTTGGATACAGTTGCAAGTATGACCGATGGATATTCTGGAAGTGATCTCAAGAATTTGTGTGTAACTGCTGCTCACCGTCCAATAAAAGAGATATTAGAAAAGGAGAAAAAGGAACGTGCTGCTGCTCTGGCAGAAGGTCGACCAGCTCCAGCATTATGTGGGAGTGGGGACATCAGATCTTTAAACATTGAAGACTTTAAATATGCTCATCAACAGGTATGTGCAAGTGTTTCTTCTGAATCAGTAAATATGACTGAGCTTTTACAATGGAATGAACTATATGGCGAAGGTGGTTCAAGAGTAAAAAAAGCACTAAGCTATTTCATGTGA 3657 0.4356 MVSTRRSGSLSASNTKRSSSSEDKPPSPKRQKVDNGASSEKSVPPAENSKELCTPEPAPDPGECGSGDAQVAGAAAADGLSPAKGDATPAVPVTAPIADTTCPSFSAWSIYQKQNPNIEAGPWCRFLSQSAQNPNVAVCTPNFTIGSNRSCNFLLKDQTISGNLCKIKHTQREGSAVAVLESTGSKGSVLVNGTLVKKNTSCVLNSGDEVVFGVMGNHSYIFQQLNTEVAVRGAEVQRRSGDPSAVTGASILASLSNLRQDLTRWKSPSQTSSKPYQGTDVSSHSVLHDCTDIELDGSESAPNVRSDKAADVGTSDKNSTMDCDPDADAEAGNVKFSGVNDFLRPFFRILARPSCKLKLSKSICKQVLEERNGTRDMQAASTSGTSVRCAVFKEDVHAAILDGKEIDVSFESFPYYLSENTKNVLVAACFMHLKHKEHEKFTADLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGSNAEKSSSCTKQNPTVTDMARNMEPLASETEAPSSSNAPTPNGLESQPKLETDTMPSTSGTAKSCVFKLGDRVKFSCSSSTGLYQTSSRGPPNGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGVEELDKLLINSLFEVVFSESRSAPFILFMKDAEKSIVGNGDPYSFKSKLENLPDNVVVIGSHTQTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKISIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLGRCGMECEGLGTLCIKDQTLTNENAEKIVGWALSHHLMQNSEADPDSKLVLSCESIQYGIGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAANRAKILKVILAKEELSPDVDLDTVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAALAEGRPAPALCGSGDIRSLNIEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1492 1218 MobiDBLite consensus disorder prediction 530 563 - -
Apr10g1492 1218 Gene3D - 122 231 - -
Apr10g1492 1218 Coils Coil 874 894 - -
Apr10g1492 1218 CDD FHA 143 223 IPR000253 GO:0005515
Apr10g1492 1218 CDD AAA 952 1085 - -
Apr10g1492 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 912 1193 IPR027417 -
Apr10g1492 1218 MobiDBLite consensus disorder prediction 1 87 - -
Apr10g1492 1218 Pfam AAA+ lid domain 1107 1142 IPR041569 -
Apr10g1492 1218 Pfam ATPase family associated with various cellular activities (AAA) 954 1083 IPR003959 GO:0005524|GO:0016887
Apr10g1492 1218 MobiDBLite consensus disorder prediction 264 286 - -
Apr10g1492 1218 MobiDBLite consensus disorder prediction 264 323 - -
Apr10g1492 1218 Gene3D - 912 1193 IPR027417 -
Apr10g1492 1218 ProSitePatterns AAA-protein family signature. 1057 1076 IPR003960 GO:0005524|GO:0016887
Apr10g1492 1218 Pfam FHA domain 144 213 IPR000253 GO:0005515
Apr10g1492 1218 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 366 1218 - -
Apr10g1492 1218 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 80 341 - -
Apr10g1492 1218 MobiDBLite consensus disorder prediction 529 563 - -
Apr10g1492 1218 MobiDBLite consensus disorder prediction 1 21 - -
Apr10g1492 1218 Gene3D - 1086 1180 - -
Apr10g1492 1218 MobiDBLite consensus disorder prediction 22 36 - -
Apr10g1492 1218 ProSiteProfiles Forkhead-associated (FHA) domain profile. 143 196 IPR000253 GO:0005515
Apr10g1492 1218 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 80 341 - -
Apr10g1492 1218 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 366 1218 - -
Apr10g1492 1218 SMART AAA_5 950 1087 IPR003593 -
Apr10g1492 1218 SUPERFAMILY SMAD/FHA domain 108 223 IPR008984 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1492 Apr-Chr10 27346986 27369057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1492 913 1161 Calmodulin-binding Proteins AT3G56690 39.453 3.34e-41 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1492 - - aprc:113849024 2323.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1492 10 27346986 27369057 Apr1g0284 1 3312357 3324197 PCT