Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1491 ATGGATGTTGTAATAGAGGTTCTCTCCGGTGCGCACTTCTCTGGTTGGCATCCTTCAACGACTTCTTCTTCTTCTCCAACACCCTCACGTCACCCTTTCGTCATCGGGGTCTCTGGAGGTACTGCATCGGGGAAAACCACAGTGTGTGATTTGATCATTCAGCAACTGCAAGATCACAGAGTTGTACTTGTCAGTCAGGATTCGTTCTACCGGGGTTTGACAAATGATGAGTTGAAACGCGTTCATGAATATAATTTTGATCATCCTGATGCATTCGACACAGAGCAACTTGTAGAAACCCTCGGTAAGCTCAAATCTGGACAATCGGTTCAGGTTCCAATATATGATTTTAAGCTCCATCAGAGATCTTCAGACAGATCCCGACAGGTCAATGCATCTGAAGTAATCATTCTAGAGGGCATATTGGTTTTCCACGAACAAAGTGTCCGCAACATGATGAATATGAAGATATTTGTTGATGCAGATCCAGATGTAAGGCTTGCCCGCAGAATAAGACGTGATACTGTTGAGCGGGGTAGAGATGTGCACTCTGTGTTGGAACAGTATGCCAAATTCGTTAAGCCTGCCTTCGATGATTTTATTCTTCCATCCAAAAAGTATGCTGACATCATCATACCTCGCGGGGGAGAGAATCGTGTGGCAATTGACTTGATTGTTCAACATATCCGCACTAAGCTCGGCCAGCATAACCTCTGCAAAATATATCCGAATTTGAACGTTATACAGTCTACTTTCCAGACCAGAGGCATGCACACTCTTATTCGTGACAGGGACATATCAAAGCATGATTTTGTATTTTATTCAGATCGGCTAATTCGTTTGGTAGTGGAACATGGTCTTGGTTACTTGCCGTTTACAGAGAAACAAGTTATCACACCTACAGGGTCAATTTATACCGGAGTTGATTTTTGTAAGAAATTGTGTGGAGTATCCGTTATTCGAAGCGGCGAAAGCATGGAAAACGCTTTGCGTGCTTGCTGTAAAGGAATAAAGATTGGAAAAATTCTTATCCACCGTGAAGGTGACGAAACCCAGCTTATCTATGAGAAGCTTCCAAAAGATATTTCAGAGAGACATGTTCTTCTCATGGATCCAGTACTTGGTACAGGTAACTCTGCCAGCCAAGCAATCGAGCTTCTTTTAAAGAAGGGAGTTCCAGAATCTCGGATAATATTCCTTAACCTCATTTCAGTAAGTTACAATAAATTTCAAAACTCATTTCAGGCTCCCGAGGGAATACATTGTGTATGTAAACGTTTTCCGCATCTGAAAATTGTCACATCGGAGATTGAGGAAGGATTAAATGACCAGTTCCGTGTCATACCAGGGTTAGGAGAATTTGGGGACCGCTACTTCGGTACGGATGATTCCTAG 1395 0.4272 MDVVIEVLSGAHFSGWHPSTTSSSSPTPSRHPFVIGVSGGTASGKTTVCDLIIQQLQDHRVVLVSQDSFYRGLTNDELKRVHEYNFDHPDAFDTEQLVETLGKLKSGQSVQVPIYDFKLHQRSSDRSRQVNASEVIILEGILVFHEQSVRNMMNMKIFVDADPDVRLARRIRRDTVERGRDVHSVLEQYAKFVKPAFDDFILPSKKYADIIIPRGGENRVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDETQLIYEKLPKDISERHVLLMDPVLGTGNSASQAIELLLKKGVPESRIIFLNLISVSYNKFQNSFQAPEGIHCVCKRFPHLKIVTSEIEEGLNDQFRVIPGLGEFGDRYFGTDDS* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1491 464 Pfam Uracil phosphoribosyltransferase 250 461 - -
Apr10g1491 464 Pfam Phosphoribulokinase / Uridine kinase family 34 220 IPR006083 GO:0005524|GO:0016301
Apr10g1491 464 ProSiteProfiles UvrC family, homology region profile. 120 221 IPR001162 GO:0009381
Apr10g1491 464 CDD PRTases_typeI 309 423 IPR000836 -
Apr10g1491 464 PANTHER URIDINE KINASE 14 460 - -
Apr10g1491 464 PANTHER URIDINE KINASE 14 460 - -
Apr10g1491 464 TIGRFAM udk: uridine kinase 33 232 IPR000764 -
Apr10g1491 464 SUPERFAMILY PRTase-like 247 460 IPR029057 -
Apr10g1491 464 CDD UMPK 34 232 IPR000764 -
Apr10g1491 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 225 IPR027417 -
Apr10g1491 464 Gene3D - 236 461 IPR029057 -
Apr10g1491 464 Gene3D - 29 235 IPR027417 -
Apr10g1491 464 PRINTS Uridine kinase signature 32 49 - -
Apr10g1491 464 PRINTS Uridine kinase signature 62 73 - -
Apr10g1491 464 PRINTS Uridine kinase signature 107 122 - -
Apr10g1491 464 PRINTS Uridine kinase signature 164 174 - -
Apr10g1491 464 PRINTS Uridine kinase signature 178 189 - -
Apr10g1491 464 PRINTS Uridine kinase signature 200 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1491 Apr-Chr10 27332648 27337608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1491 1 463 PRT Gene Family AT5G40870 75.975 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1491 K00876 - gmx:100816209 846.654