Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1485 ATGGCTACTTGTACTTTTCTTTCCCTTTGTCCTCACGCGTTCTGTTGCCGGCACCGCCCTTACCCTACACGCCGTTCCCTTACTTGCTCTTTTTCCTCTTCTGTCCTCTCAGATACTGATGGATCTAAAGTGCTGCGGAAAAGATCAAGAAAAATAGAAGGTCCTAAAAAAAGCATGGAAGACTCTGTTCAACGTAAGATGGAGGAGTTTTATGAAGGACGGGATGGGCCACCCCTCCGAGTTCTTCCTATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGCAACTATGATCGCTATATCCTCATTGATGCCGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTTCAAAAGATCATACCTGATACAACATTTATAAGAAAGTGGAGCCACAAAATTGAAGCAGTCGTTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCATGGGTCATCCCAGCATTAGATTCTCGAACCCCAATTTTTGCATCATCCTTTACAATGGAGCTTATAAGGAAACGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTCAAAGTATTTAGAACAAGGAAAAAGTTTGTGGCTGGTCCATTTGAGATAGAGCCTATCACAGTGACTCATTCTATTCCTGATTGCTGTGGATTAGTGCTTCGCTGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATCGATGAAACACCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTTGAGGAACTCTCTAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAATCAGCGAATCTCTTGTGGCAGATGCATTATTAAGGCATATTTCAGCTGCTAAAGGAAGGGTTATAACAACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGAACATATTTGGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCTACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTTATTGTAACAACAGGTTCTCAAGCAGAACCACGTGCTGCCTTGAATCTTGCATCGTATGGAAGTAGTCATTCTTTCAAACTGACAAAGGAAGATATTGTTCTGTACTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGAGATTGGATCAACTATTGTTATGGGGAAGAATGAATGTCTGCATACATCTGGTCATGGGTATCGTGGAGAATTGGAGGAAGTACTTAGAATTGTGAAGCCGCAACATTTTCTTCCCATACATGGAGAACTATTGTTCTTGAAGGAGCATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTACTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCTCATTTGAGAAACAGAAGAGTCCTTTCTAATGGTTTCATTTCACTTGGAAAAGAGAATTTGCAGTTGATGTACAGTGATGGTGACAAAGCATTTGGTACATCCGGTGAACTCTTCATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATTGTGGTTAGCATGGAAATCTCTCGCCCTAAAAATTTAGACAGTCCATTTGAAAACACCTTAAAAGGAAAATTAAGAATTACCACAAGATGCCTGTGGCTTGACAAGGGAAAGCTGTTGGACGCACTCCATAAAGCAGCTCATGCTGCTCTTTCAAGCTGCCCTGTAAACTGTCCACTGGCTCACATGGAAAGAATTGTGTCTGAGGTGCTGAGGAAAATGGTGCGGAAGTACAGTGGCAAAAGGCCCGAAGTTATTGTCATTGCCCTAGAAAATCCTGCAGCTGTTCTTGCTAATGAGATAAATACAAGGTTGTCTGGAAAACCTCTTGTGGGTGGGGTATCGACATTGAGAAAAGTGGCAGATGGACACAGGAAAGAAAATCAGAGAACTAAAATGCAAACAAGAGATCAAATTGACATGGATGGTCTACTGCCTACTGATGATGCTGCTGTCTCAACTGGTGTTGAGGATGATTTGTCTGATGCAGAGGATTCAGATGAATTTTGGAAAACATTTGTTGAATCCTCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTTGCTCGAAAGGAGCAGTCATCCCAGCTGAAGATAGATGATTCTGAAGACGCTGAAGAATGCAGTTTTGTGGAGACATCAAATTCTAAAGCCAAATCTTCAAAATTAGCAAAGAGAAATAAATGGAAACATGAGGAAGTTAAGAAGCTGATTGGTATGCGTGGGGAACTCAATGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAAATATCTCAGAACTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGGCAGTGTAAATCCCTGTGGACATCCTTGTTACAGAAATATGAGGAGGTTAAGAATGAGAAGAAGAGCAAGAAAAAATGGCCATATCTTGAGGACATGAAAAGGATTCTGCCTGATAATGAGGCGTTAGCAACAAAATGA 2607 0.4154 MATCTFLSLCPHAFCCRHRPYPTRRSLTCSFSSSVLSDTDGSKVLRKRSRKIEGPKKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEAVVITHGHEDHIGALPWVIPALDSRTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFVAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESLVADALLRHISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDIVLYSAKVIPGNESRVMEMLNRISEIGSTIVMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLMYSDGDKAFGTSGELFIDERMRIALDGIIVVSMEISRPKNLDSPFENTLKGKLRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERIVSEVLRKMVRKYSGKRPEVIVIALENPAAVLANEINTRLSGKPLVGGVSTLRKVADGHRKENQRTKMQTRDQIDMDGLLPTDDAAVSTGVEDDLSDAEDSDEFWKTFVESSPVEKSIKANNGYVARKEQSSQLKIDDSEDAEECSFVETSNSKAKSSKLAKRNKWKHEEVKKLIGMRGELNDRFQVVKGRMALWEEISQNLLADGISRSPGQCKSLWTSLLQKYEEVKNEKKSKKKWPYLEDMKRILPDNEALATK* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1485 868 Gene3D - 280 430 IPR042173 -
Apr10g1485 868 PANTHER RIBONUCLEASE J 1 868 - -
Apr10g1485 868 Gene3D - 777 838 - -
Apr10g1485 868 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 868 - -
Apr10g1485 868 CDD RNaseJ_MBL-fold 82 493 - -
Apr10g1485 868 CDD GT1 775 836 - -
Apr10g1485 868 ProSiteProfiles Myb-like domain profile. 769 833 IPR001005 -
Apr10g1485 868 Gene3D - 83 495 IPR036866 -
Apr10g1485 868 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 477 IPR011108 -
Apr10g1485 868 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 493 IPR036866 -
Apr10g1485 868 SMART Lactamase_B_5a 91 288 IPR001279 -
Apr10g1485 868 Pfam Beta-lactamase superfamily domain 102 238 IPR001279 -
Apr10g1485 868 Pfam Myb/SANT-like DNA-binding domain 774 858 IPR044822 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1485 776 859 Trihelix Transcription Factor Family AT2G38250 36.047 9.06e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr10g1485 Lactamase_B_2 9.9e-11 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1485 - - gmx:100814619 1506.5