Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1482 ATGGCGGCAGGAAGAAAAAGTGTTTCTCTGAGGCGAGAATCTTACAAATATGGTTCCACCAAGGGTTTTGATGATAGGAGTGGTTCTTTCGGCGTGGAAGTGGGTGGATCGGGATCTCGCTACCATCACGTTATCCGTTCTGAACAGAATGGGTTTCATGGTGGGAAAGAGGAGAGAGAGCAAGGTGAAATCTGTGTTGAGCATGTCTCTGGTTTGCCACCGCCAGAGAAGAAAAGAAAATTTTCTCCAATCATATGGGACCTAGCAGAGGAGGGAGTAAGAATCTCTTCAGAAAGCAAGCTCTCGAAGGTGGCAGTTATCTCTCCCCCTCGTCCTTCTCCATCGAGTAATCCTGGAGCCAATGATGCTTTTTATGGGGATGTTATGGAGGTGTGTTCCCCAAATTCCTCTCATATGTTGCCTCAAAAATATTTCCAAAACAATAACCAAGATGTGGAGGGAGAGAATGAGGTGCAAATGTGGACCATCACAAAGTCAAGATGGGCTTGTGATGATGGTCTTTCGCCAATTGGTGCTGATGATAAACACCAACATGGGAAAGGGAGCTCCAGTCCTGAAACAGGTGAGTTCCAAAGAGAATGTTCAGAGAGCACTGTCACTAGATCATCAGGAGGCAGTGGAAGAGATCATTATCTGAGCCCATCTACCGATGATACTGATTCTAAAAAGGATTTCCTTATGGACTCCATGGACGATGTTGAGGAACAAAGTGATGTCAGTGATTCTCCGGCAGATTCTGAGAATGGTGGTTTGATACATGTGCAGAGAAATATAAACATGCTTCAGAGTTGCAGAAGTGTGTGCGAGTTTGAGATGATTAAGAAAATAAATGAAGGAACTTATGGTGTTGTCTATAAAGCTAGGGATAAGAAAACTGGAGAAATAGTAGCATTGAAGAAGGTGAAGATGAACATAGACAGGGATGGCTTTCCGTTGTCGTCCTTGAGGGAAATAAACATTCTCTTGTCTTTCAATCATCCCTCTATTGTGAATGTTAAAGAAGTAGTTGTTGATGATTTTGATGGTACTTTCATGGTAATGGAGTATATGGAATATGACCTCAAGGGGCTGAAGGAGGTAAAGAAGCAGCCCTTTAGCATGAGTGAAATCAAATCCTTGATACAGCAACTTCTTGAAGGTGTCAGGTATCTCCATGATAATTGGGTTATCCATAGGGACTTGAAGACATCAAACATTCTTGTGAACAATGAAGGGGAGTTGAAAATATGTGATTTTGGGTTGTCAAGGCAGTATGGAAGCCCACTGAAGCCATACACTCCTGTTGTGGTTACGCTATGGTATAGAGCACCTGAACTATTATTGGGTGCAAAAGAATACTCAACAGCAATTGACATGTGGTCAGTGGGTTGCATAATGGCTGAATTAATTGGCAAGGAACCTCTGTTCAAGGGTAAAAGTGAACTTGAACAACTTGATAAGATTTTTCGAACCCTGGGTACACCAAATGAGAAAATTTGGCCAGGATTATCTAATTTACCTGGTGCTAAAGCAAATTTTGTTAAGCAACCGTATAACATGCTAAGGAAGAAATTTCCAGCCACATCTTTTACTGGTTCAACTGTATTATCTGAGTTGGGATTTGACTTGTTGAAGAAGCTGCTTACTTACGACCCTGAAAAGAGGATATCTGCAGAAGATGCTCTCCTTCATGATTGGTTTCATGAAGTGCCACTTCCCAAATCTGATTTCAGGCCTATTTTTCCTTCTTGGCGGTGCTAG 1761 0.4219 MAAGRKSVSLRRESYKYGSTKGFDDRSGSFGVEVGGSGSRYHHVIRSEQNGFHGGKEEREQGEICVEHVSGLPPPEKKRKFSPIIWDLAEEGVRISSESKLSKVAVISPPRPSPSSNPGANDAFYGDVMEVCSPNSSHMLPQKYFQNNNQDVEGENEVQMWTITKSRWACDDGLSPIGADDKHQHGKGSSSPETGEFQRECSESTVTRSSGGSGRDHYLSPSTDDTDSKKDFLMDSMDDVEEQSDVSDSPADSENGGLIHVQRNINMLQSCRSVCEFEMIKKINEGTYGVVYKARDKKTGEIVALKKVKMNIDRDGFPLSSLREINILLSFNHPSIVNVKEVVVDDFDGTFMVMEYMEYDLKGLKEVKKQPFSMSEIKSLIQQLLEGVRYLHDNWVIHRDLKTSNILVNNEGELKICDFGLSRQYGSPLKPYTPVVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELIGKEPLFKGKSELEQLDKIFRTLGTPNEKIWPGLSNLPGAKANFVKQPYNMLRKKFPATSFTGSTVLSELGFDLLKKLLTYDPEKRISAEDALLHDWFHEVPLPKSDFRPIFPSWRC* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1482 586 SMART serkin_6 277 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1482 586 CDD STKc_CDC2L1 271 567 IPR045267 GO:0004674|GO:0005524|GO:0006468
Apr10g1482 586 PANTHER CYCLIN-DEPENDENT KINASE 142 585 - -
Apr10g1482 586 ProSiteProfiles Protein kinase domain profile. 277 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1482 586 Pfam Protein kinase domain 277 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1482 586 PANTHER CELL DIVISION PROTEIN KINASE 142 585 - -
Apr10g1482 586 MobiDBLite consensus disorder prediction 190 219 - -
Apr10g1482 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Apr10g1482 586 Gene3D Transferase(Phosphotransferase) domain 1 359 576 - -
Apr10g1482 586 Gene3D Phosphorylase Kinase; domain 1 260 358 - -
Apr10g1482 586 MobiDBLite consensus disorder prediction 174 231 - -
Apr10g1482 586 MobiDBLite consensus disorder prediction 239 258 - -
Apr10g1482 586 SUPERFAMILY Protein kinase-like (PK-like) 271 573 IPR011009 -
Apr10g1482 586 MobiDBLite consensus disorder prediction 99 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1482 Apr-Chr10 27259374 27263847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1482 272 573 Core Cell Cycle Gene Families AT5G10270 45.597 3.18e-86 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Apr10g1482 Pkinase 6.7e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1482 K08818 - gmx:100788840 860.522