Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1477 ATGAAATCCCTTCTCCGTAGAAATATCTTCTTTCTCTCATCATCTTCACCTGGCGCGCTTCAAGCGCGTGAATTATCATCTTCTCCTCATCAGTGGAGTCGCTGCGGAGAGGAGGAAGAGTCTTCACGAAATGTTAGGGTTTCGGTGTGGTGGGATTTCAAGAACTGCCACGTGCCCGAGGGCTACGACGCTTCCAAAGTCGCATTCGCAATCATGCAAGCAGTGAGAACGAACGGAATTAAGGGTCCTCTTAATATCACCGCTTTCGGCAACGTTCACCAACTCTCCCAATCCAACCAAGAAGCACTTGTTTACACCGGCATTCGTTTATCTCACGTTTCCAATGATGGAAGGAATAGTGCTGATATTCTTGTTGATCTTATGTATTGGGTTTCCCAAAATCCTCCACCTGCGCATCTATTTTTTATATCTGGTGATAGAGATTTTGCTGGCATATTGCATAGGTTAAGAATGAATAACTACAATATCTTGCTTGCTACTCCGACGAAGCCTCCTAGTGTTTTGTGCACTGCGGCTACTATAGCATGGCAATGGTCTTCGTTACTTAAGGGAGAAGATCTTGCTGGAAAACATTTCAACCCTCCTCCTGATGGTCTGATTGGTTCTTGGTATGGAAGCTACAAGGCGCCTCTTGCCAAGCCTTTAACGGATGTGGAGATCTATGAACCTTCCTTAGAGGTAAAGTTAGGTTTGATTCCCAGTTCAGTTGCGAGGCAGGTTAGGCATATATTGAGTTCGCATCCAAAAGGGATCTGCATTACAGATCTTCATGTTAAGTTGGCAAAATGTGATGTGCGTTTGGATAAAAACTTTTATGGATATAAAAAGTTTTCCCACTTTCTATCATCAATTCCACTAGTACAACTCCAGCCTTTAGGTGATGGTGATTTTAATGTACATCTGGTTCCTTCAGAATCCCCTAAACCTTTTGAGAGCAGGGTTGTGCCGTCAACAATGGCTGTTGTTAAGAATGAGGAGAGAGGATATGCAGCAACTCCAAAACTAAATGGTGATGATAAAAATAAGGCTAAAGATGTGGACGAGACATCCTCAATTGCCTCATTCCATGAAAGGAGTTTGGATGATGATTTAAAATCATTCCAATCGGTCTCTTCACAAGGGAAACCCGATGAGGAATTTATGGATGTTAAATCATCATTTCCTTCATTTGTTGACAGACATTTTGTTCAGACCCCAAATGTGTTGCAGAAATCTTCTGTGGCTAGTGACAATATTGTGGATGTGGGTAATGCACAGCAATCAGAGATTCAACTGTTTCCCAAGGACAACAAAGATTTCAAAACTCGGACAGGTTCTGTAGAAATGACATCTCAAAACACGTTTGATGATGACATTGTGAAGTCAGAGGGTGTAAGTCATAAAATTCTGGAAAATAATGCAACTTCAGGGAATCACTCTTCTGGAAATAATTACTCAATGGTGGAAAACGATGCTATTGCAGAGTGCGAATCTGAAAATTTAAAAGCAGAGAGCAAATGTGAGAGTTCAACTAGAAATGAGGTTGGTGGAGTTTGTCACAGTCTATATTCTTCACCAACTGAGGAATCTCTTGTTGACAAAAGACCTGGGGGAAGTGTTGAAACTTATAGCAGAAGTCCAATATTCTTTAGCTGCATTAGAAGTCGGTGGCCATTTTGGAAAAGCAATGCAAAGTATGATGATTCAGCTGCTCATCAGAGCAAGGTAACCAGTCATGTTGAGAATTCCAAGGTATCTGAACTAGACCAGACTGTTAGTCATTTTGAAGATCGTAAGGTATCAGAACTGGATCAGAATGCTAGTTGTTCTGGAAAGCCTAAGTTATTTTCTAGTGTTTCCTTTTGGAATGATGTGGAATCTTTTGTTTTCACGCCCAAAGGATCACTTCTTTTCTCCCAGTCAAGAAGCAGGGAGGATATGGCACATAAATTACAAAATGATGGGCCCCTGGCTCTTAGATCTCTGTTAAAAAAAGATATTCTTCAATTGGTGGAACTGTTAATAGCAGAGAAAAAGTGGTTGGAGGAAAGCCCCTCCCAAACATTTCCTTTTAGGCTAACTCAACCGCTTCAGAAGAATTCTATGGTGGGCCAATCTCATGGTTCAAATGGTTTGAGTTCTCTCTTTCTAAGTAGAACATCACAGTCCAACTTGCAAAAGCCATTGAAACATCATGTGGAGAAACAAAATCAGAGTATTTCTCATACTAGAGTTTCTGCACCTGCTACTGAAACAAAATATGCAAAGAGGTCTAGAAATGATATATTAGAAGACTGTCAGAAACTTGTGAGTGAGATATTGAGGAAACACCCAGAAGGATATAATATTGGTTCTTTCCGAAGGCATTTTGCTGATAGGTATGGCTATCATCTTGATATACAGGAGCTTGGTTTTCAAAAGTTGGCATCCTTGCTACAGATAATGCCTGGTGTTAAATTAGAGCTCACTTATATTTTTCCTTTTGTTCCTGCTGTTTCTGTTTCTGACCTGGAAACTTTAGCTTCCAACTCAGATAGTGCATTATCTGAGTCACCCATGAAAGATGATAACATGGAATCCCCACGGGAGGAATTAGTTCCCATTTCTGTGAACCATTCCAACCCGAGTGACCTGGAAGATAAGTTACTTGAGAAAGCCATAGAACTGGATTTGTCAAAGCATCCTGATTATGAACCAGTTGTCTTGGATGATGATACTTCCGACTCTGAAGGAGATAGCTCTTGTTTAACGCAACCAGAAGAGCAAGAAAAGACAAAATGTGATGAAGAAGACAATTATTTTTGGCAAGCTAAGGATTTGTGGCACAGCAGCAAGGGAAGAGAGATTAGTGTAAAGCAATCAGACAATGTTAATGTCTTGTACACTTCTCTGGCTGATATTTTAAATTCGTCCTCTGCGTCGACTAAGGGTACCCTTTCCAAAACTCCTTCGTCAAATTACAGAGAGAAGCAAAAATCTCAAAAGAACTATTCATTTGTTGATGATCCGGTCTTACCTAACAAGGACAAACTGATTAATGGAATATTAGATGGCAACAAGAAAGCAGACGAGTCGAAGATGTAA 3084 0.4056 MKSLLRRNIFFLSSSSPGALQARELSSSPHQWSRCGEEEESSRNVRVSVWWDFKNCHVPEGYDASKVAFAIMQAVRTNGIKGPLNITAFGNVHQLSQSNQEALVYTGIRLSHVSNDGRNSADILVDLMYWVSQNPPPAHLFFISGDRDFAGILHRLRMNNYNILLATPTKPPSVLCTAATIAWQWSSLLKGEDLAGKHFNPPPDGLIGSWYGSYKAPLAKPLTDVEIYEPSLEVKLGLIPSSVARQVRHILSSHPKGICITDLHVKLAKCDVRLDKNFYGYKKFSHFLSSIPLVQLQPLGDGDFNVHLVPSESPKPFESRVVPSTMAVVKNEERGYAATPKLNGDDKNKAKDVDETSSIASFHERSLDDDLKSFQSVSSQGKPDEEFMDVKSSFPSFVDRHFVQTPNVLQKSSVASDNIVDVGNAQQSEIQLFPKDNKDFKTRTGSVEMTSQNTFDDDIVKSEGVSHKILENNATSGNHSSGNNYSMVENDAIAECESENLKAESKCESSTRNEVGGVCHSLYSSPTEESLVDKRPGGSVETYSRSPIFFSCIRSRWPFWKSNAKYDDSAAHQSKVTSHVENSKVSELDQTVSHFEDRKVSELDQNASCSGKPKLFSSVSFWNDVESFVFTPKGSLLFSQSRSREDMAHKLQNDGPLALRSLLKKDILQLVELLIAEKKWLEESPSQTFPFRLTQPLQKNSMVGQSHGSNGLSSLFLSRTSQSNLQKPLKHHVEKQNQSISHTRVSAPATETKYAKRSRNDILEDCQKLVSEILRKHPEGYNIGSFRRHFADRYGYHLDIQELGFQKLASLLQIMPGVKLELTYIFPFVPAVSVSDLETLASNSDSALSESPMKDDNMESPREELVPISVNHSNPSDLEDKLLEKAIELDLSKHPDYEPVVLDDDTSDSEGDSSCLTQPEEQEKTKCDEEDNYFWQAKDLWHSSKGREISVKQSDNVNVLYTSLADILNSSSASTKGTLSKTPSSNYREKQKSQKNYSFVDDPVLPNKDKLINGILDGNKKADESKM* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1477 1027 MobiDBLite consensus disorder prediction 732 753 - -
Apr10g1477 1027 Pfam NYN domain 46 179 IPR021139 GO:0004540
Apr10g1477 1027 Pfam OST-HTH/LOTUS domain 763 818 IPR025605 -
Apr10g1477 1027 Pfam OST-HTH/LOTUS domain 241 302 IPR025605 -
Apr10g1477 1027 Gene3D - 757 823 IPR041966 -
Apr10g1477 1027 Coils Coil 493 513 - -
Apr10g1477 1027 MobiDBLite consensus disorder prediction 843 862 - -
Apr10g1477 1027 PANTHER EMB|CAB71880.1 19 963 - -
Apr10g1477 1027 MobiDBLite consensus disorder prediction 896 928 - -
Apr10g1477 1027 CDD LOTUS 240 302 - -
Apr10g1477 1027 Gene3D - 240 314 IPR041966 -
Apr10g1477 1027 ProSiteProfiles OST-type HTH domain profile. 762 836 IPR025605 -
Apr10g1477 1027 MobiDBLite consensus disorder prediction 973 1000 - -
Apr10g1477 1027 ProSiteProfiles OST-type HTH domain profile. 239 310 IPR025605 -
Apr10g1477 1027 MobiDBLite consensus disorder prediction 973 1027 - -
Apr10g1477 1027 CDD PIN_limkain_b1_N_like 46 168 - -
Apr10g1477 1027 CDD LOTUS 763 818 - -
Apr10g1477 1027 PANTHER LIMKAIN B LKAP 19 963 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1477 Apr-Chr10 27204968 27209275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1477 45 191 C2H2 Transcription Factor Family AT5G61190 41.611 6.61e-34 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1477 - - aprc:113850520 1209.51