Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1466 ATGGAACCCTCTGAATCCGATTCTGCTGCACTTTCCAATTCCAATGGCGAGGACCTGCAATTGGGTCCTGAGGGGGCACCTTCTTCTGCCCCCGATGCCCTTCCTCCACCGTCAGATCTCAATCACGCGGCTGAGGAAGACTCACTTCGTGAAGAGCTTCAGAACAAGTTGGATTTGAATGTTGGGGAAGAAAGTACTGAGAAAGTTTCGGACTTTAACGATGGTGGAGGAGTTTGTGATGAAGAAACTGGTAAGGGTGAAGAAGGGTGTGATGGAGATAGCAGGGGTTGGGAGATTAATAGTTGGAATGAGGAAGTGGGTGTTGATGTTGATGCTGATGTTGATGTTGACATTGATGGTGATGGTGATGGAGTGGAGAAGAAGGAAGAGAAAAGTGGTGGTGGAACTCATCAATACCCTTTGAGGCCTGAAGCTGAAGATTGTGCTTTCTATATGAAAACTGGGACTTGCAAGTTTGGGTTCAATTGCAAGTTTAATCACCCCATAAGAAGGAAAAACCAGGCTGTGAAGGACAAGGCTGGAGAAAGAGAGGAATCTGCAGAAAGACTGGGCCTGACAGAATGCAAGTATTATCAAAGGTCTGGGGGCTGTAAGTTTGGAAAATCTTGTAAATATAACCACACAAGAGGAAAATGTTCAACAGCACCAGTTTTAGAACTTAATTTTCTAGGCCTGCCTATTCGTCAGGGAGAAAAAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCTAACTGCAAGTTTAACCATCCTGACCCTACAGCTGTTGGAGGCTGTGATCCTCCTTCAGGGTATGGTAATGGAGGGTCCATTTCATTACAAGGTGTATCACAGCAATCTGTACCCTCCTGGTCTTCTCCAAGAACATTAAATGAAGCATCCCCTTTTGTGCCAGTGATGCTCCCGCCTACTCAAGGAATTTCTACTCAAAGTTCTGATTGGAATGGATATCAGGCACCTGTATACCTATCTGAGAGGAGCATGCATCCCCCTTCTACATTTGTCATGAACAACCCAGCAATTGAAACAAATGTCTATATACCCCACCAAAAGCAGATGCCTGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGGTTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAATCTCAGCGATAAGGGTCTGCCTTTAAGACCTGACCAAAGTGTCTGCTCACATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGATCACCCGATAAGCTCACTGCCCTTGATGGTGCCTGGACTTGGTCAGCAATCCTACTCAAATTCAGCTAGTGTTGAGGTGGCTGGGATAGGTGAAAGTGCAGGTGCAAGTGATGCCGCAATTCAGCAATCTGTGTAA 1458 0.4527 MEPSESDSAALSNSNGEDLQLGPEGAPSSAPDALPPPSDLNHAAEEDSLREELQNKLDLNVGEESTEKVSDFNDGGGVCDEETGKGEEGCDGDSRGWEINSWNEEVGVDVDADVDVDIDGDGDGVEKKEEKSGGGTHQYPLRPEAEDCAFYMKTGTCKFGFNCKFNHPIRRKNQAVKDKAGEREESAERLGLTECKYYQRSGGCKFGKSCKYNHTRGKCSTAPVLELNFLGLPIRQGEKECPYYMRTGSCKFGANCKFNHPDPTAVGGCDPPSGYGNGGSISLQGVSQQSVPSWSSPRTLNEASPFVPVMLPPTQGISTQSSDWNGYQAPVYLSERSMHPPSTFVMNNPAIETNVYIPHQKQMPVEEFPERPGEPECSYFLKTGGCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPISSLPLMVPGLGQQSYSNSASVEVAGIGESAGASDAAIQQSV* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1466 485 MobiDBLite consensus disorder prediction 121 135 - -
Apr10g1466 485 ProSiteProfiles Zinc finger C3H1-type profile. 189 217 IPR000571 GO:0046872
Apr10g1466 485 SUPERFAMILY CCCH zinc finger 415 443 IPR036855 GO:0046872
Apr10g1466 485 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Apr10g1466 485 SUPERFAMILY CCCH zinc finger 376 400 IPR036855 GO:0046872
Apr10g1466 485 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 6 485 - -
Apr10g1466 485 PANTHER PROTEIN PHOSPHATASE RELATED 6 485 - -
Apr10g1466 485 SUPERFAMILY CCCH zinc finger 237 262 IPR036855 GO:0046872
Apr10g1466 485 MobiDBLite consensus disorder prediction 114 139 - -
Apr10g1466 485 ProSiteProfiles Zinc finger C3H1-type profile. 235 263 IPR000571 GO:0046872
Apr10g1466 485 ProSiteProfiles Zinc finger C3H1-type profile. 417 445 IPR000571 GO:0046872
Apr10g1466 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 373 398 IPR000571 GO:0046872
Apr10g1466 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 419 443 IPR000571 GO:0046872
Apr10g1466 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 168 IPR000571 GO:0046872
Apr10g1466 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 194 214 IPR000571 GO:0046872
Apr10g1466 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 261 IPR000571 GO:0046872
Apr10g1466 485 SUPERFAMILY CCCH zinc finger 192 218 IPR036855 GO:0046872
Apr10g1466 485 MobiDBLite consensus disorder prediction 1 19 - -
Apr10g1466 485 SMART c3hfinal6 189 216 IPR000571 GO:0046872
Apr10g1466 485 SMART c3hfinal6 417 444 IPR000571 GO:0046872
Apr10g1466 485 SMART c3hfinal6 371 398 IPR000571 GO:0046872
Apr10g1466 485 SMART c3hfinal6 142 169 IPR000571 GO:0046872
Apr10g1466 485 SMART c3hfinal6 235 262 IPR000571 GO:0046872
Apr10g1466 485 ProSiteProfiles Zinc finger C3H1-type profile. 371 399 IPR000571 GO:0046872
Apr10g1466 485 MobiDBLite consensus disorder prediction 1 95 - -
Apr10g1466 485 MobiDBLite consensus disorder prediction 43 94 - -
Apr10g1466 485 Gene3D - 370 450 - -
Apr10g1466 485 Gene3D - 184 269 - -
Apr10g1466 485 SUPERFAMILY CCCH zinc finger 141 170 IPR036855 GO:0046872
Apr10g1466 485 Gene3D - 118 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1466 Apr-Chr10 27098133 27102389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1466 136 477 C2H2 Transcription Factor Family AT3G02830 40.274 1.98e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr10g1466 zf-CCCH 7.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1466 - - gmx:100786894 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1466 10 27098133 27102389 Apr1g0260 1 2902736 2908730 PCT