Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1463 ATGTCCACCACTTCACTCTCTCTTATCCTCTTCCTCTTCTCTCTCCTCACCCCAACCCTCATTTCCTCCTCCCCTGTTCAAGACCCTCAATTGGTGGCCCATGAAGTAAACAGGAAAATCAATGCCTCTATGGCTAGGAGGAACTTGGGGTTTCTCTCATGTGGGAGTGGGAACCCCATTGATGATTGTTGGAGGTGTGACCCCAATTGGGAGAAGAACAGGCAAAGGCTAGCAGATTGTGCAATTGGGTTCGGGAAAAACGCCATTGGTGGAAGAGATGGAAAAATCTACGTTGTCACTGATTCTGGCGATGATGACCCTGTGACGCCTAAGCCAGGGACCCTTCGTTATGCGGTGATTCAAGACGAGCCATTGTGGATCATATTCGCCAGAGACATGGTGATTCAGCTGAAGGAAGAGCTCATCATGAACTCGTTCAAGACTATTGATGGAAGAGGTGCTAGCGTGCACATTTCTGGTGGCCCATGCATTACTATACAGTATGTGACAAATGTTATAATCCATGGGATACATATTCATGATTGTAAGCAAGGTGGGAATGCTATGGTGAGGGACTCCCCACGCCACTACGGGTGGAGAACCGTATCGGATGGTGATGGCGTGTCCATTTTTGGTGGAAGCCACATTTGGGTGGATCATTGCTCTTTGTCTAATTGTAATGATGGGTTAATTGACGCTATACATGGGTCCACCGCAATTACTATCTCCAACAATTACATGACTCACCATGATAAGGTCATGCTTTTGGGTCACAGCGATTCCTACACACAAGACAAGAACATGCAAGTCACAATTGCTTTCAACCACTTTGGAGAAGGCCTGGTTCAGAGGATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTATACCCACTGGGAAATGTATGCTATAGGGGGGAGTGCTAACCCAACCATCAATAGCCAAGGCAACAGATTCGTTGCACCCGATGAGAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAATGGAAGGGGTGGAATTGGAGGTCAGAAGGAGACCTATTAGTAAACGGTGCATTTTTCACAGCATCAGGAGCAGGAGCCTCATCAAGTTATGCAAGAGCTTCAAGCTTAAGTGCAAGGCCATCTTCACTAGTGGGTACCATAACAACTGGTGCGGGTGCACTCAGCTGTAGGAAGGGCTCTCGTTGCTGA 1221 0.475 MSTTSLSLILFLFSLLTPTLISSSPVQDPQLVAHEVNRKINASMARRNLGFLSCGSGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDSGDDDPVTPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDERFSKEVTKHEDAPESEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGTITTGAGALSCRKGSRC* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1463 406 Gene3D - 57 399 IPR012334 -
Apr10g1463 406 Pfam Pectate lyase 142 323 IPR002022 -
Apr10g1463 406 SUPERFAMILY Pectin lyase-like 40 400 IPR011050 -
Apr10g1463 406 PANTHER PECTATE LYASE 18-RELATED 2 403 IPR045032 GO:0030570
Apr10g1463 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Apr10g1463 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Apr10g1463 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Apr10g1463 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Apr10g1463 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Apr10g1463 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Apr10g1463 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Apr10g1463 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Apr10g1463 406 SMART amb_all 132 329 IPR002022 -
Apr10g1463 406 PANTHER PECTATE LYASE 2 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1463 Apr-Chr10 27052326 27054399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1463 1 406 Polysaccharide Lyase AT5G63180 81.907 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1463 K01728 - gmx:100101868 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1463 10 27052326 27054399 Apr1g0251 1 2736116 2738854 PCT