Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1460 ATGCTGGAGATTGGGAAGTTGAACGTCACTGCCTTCACGAATTTAGTGACTCTACATCTATACGGAATGGGACTTAGAGGAAGCATCCCTACAGAAATAAGCAGACTTACAAAGCTTGTATTTCTTGACCTGTCCAACAATCGCCTAAGTGGTTCAATCCCTTCCACATTGGGTCAATTGAAGAATTTAATCTATCTCTACCTTGATTCAAACCAATTTCAAGGTCCTATTCCAATGGAACTGGGGAATCTAACACTATTGACCGGATTATATCTCTCACATAATTCACTTTCCGGTTCAATTCCTTCCACGTTGGGTCAATTGAAGAATTTAACCTATCTCTACCTTGGTTCAAACCAATTTGAAGGTCCTATTCCAATGGAACTGGGGAATCTGACACAATTAAAAAAATTAGATCTCTCTCATAATTCACTTTCCGGTTCAATCCCTTCCACGTTGGGTCAATTGAAGAATTTATCCTATTTTGACCTTGGTTCAAATAAATTTGAAGGTCGTATTCCAATAGAACTAGGCAATTTGGCGTATCTAAATATCTTAAATCTATCACATAATTCTCTTACTGGGTTGATACCATCGGAGATGCCCATCGGTCTTTCAGATGTAGACCTTTCCCACAACAACCTCATAGGGTTTATCCCATCTTCAATCCTAAAGTGTCCCTATATCCAAAATGTGGATTTAAGCTATAACTTGCTATATGGAACCATCTCTTCCCAAATCCACTGTGTTTATCACCTTCAGCTTAGCCATAATTTTTTGAATGGTGAGATTCCATTTCTTCCAGAAATAGACTCTGCGTTAAATAGTTTGGATCTTAGTTATAACAATCTCACAGGCAAATTGCCCAAAGAACTTGCTGCTCTATCTTACATAAATTTGTCATACAATTCTTTTGACTTCTCACAAGACCTTGACAGCAACTCACGGTTACCAGATTACTGTTCTTTTAAGAAAGACTCAATAATTAGTTACCACATGCCAAACTTCACATCATGCCATTTTGTTCACCACCGCAATTTTTTCCACCAAACCAATCCTCTTGCAAGCAAAAACAAACTCCTCCTGTTAATTTTTCTCCCCACCATCTGCTTCATTCTTTTTGTATTACTTTCAGTATTTTATTTTGCAAGGTTGATGTTAAAGAACAAACCTGAAGAAAGATCAACAAACAATGGAGACTTATTTTCTATATGGAACTATGATGGTAAAATTGCATTTGAAGACATCATTGAAGCAACAGAGGACTTTCACCTCAAGTACTGCATTGGAACTGGTGCATATGGTAGCGTCTATAGAGCACAATTGCCTAGCGGTAACATTGTTGCATTGAAGAAACTTCACCAAATGGAATCTCAAAATCCAACTTTTGACAAGAGTTTTCGCAATGAGGTCAAGATGTTAACAGAAATCTGCCACAAAAACATTGTAAAGCTTCATGGGTATTGCCTTCACAATCGTAGCATGTTTCTTGTCTATCAATACATGGAAAGAGGTAGCTTATTTTATGTCTTGAACAACGATGTGGAAGCTGAGGAGTTGAATTGGAGTATGAGGGTGAATATCATTAAAGGAATGGCACATGCTTTGTCCTACATGCATCATGATTGTACCCCACCAATTATTCATCGAGATGTAACAACTAGCAATGTTTTGTTGAACTCACAATTGGAGGCTTTTGTTTCAGACTTTGGCACTGCTAGACTCCTTGATCCTCATTCCTCCAATCAAACCTTAGTAGTCGGCACTTATGGCTATGTTGCCCCAGAGCTTGCATACACATTGAAGGTGACAGAAAAATGTGATGTTTACAGTTTTGGAGTCGTGGCTTTGGAAACATTAATGGGAAGGCATCCAAGAGAGCTGCTCTCATCTTTATCAAACCCATCTAATCAAAACTTCTTGTTGAAGGACCTCTTGGATTCACGTCTTCCCCTTCCTTCCAGTCAAAAAGATGCTCAAGATATTGTACTTGTGGGAACAATAGCATTAGCATGTTTGTGTTCCAAACCAAAGTTCAGACCATCAATGCAACAAGTGGCTAGGAAACTCTCTTGTTACAAATTGTCACTGCCTTTGCCTTTGTATGAGATTTCAATCCATCTCTTAATGTCTCAAGAAATATGA 2145 0.3828 MLEIGKLNVTAFTNLVTLHLYGMGLRGSIPTEISRLTKLVFLDLSNNRLSGSIPSTLGQLKNLIYLYLDSNQFQGPIPMELGNLTLLTGLYLSHNSLSGSIPSTLGQLKNLTYLYLGSNQFEGPIPMELGNLTQLKKLDLSHNSLSGSIPSTLGQLKNLSYFDLGSNKFEGRIPIELGNLAYLNILNLSHNSLTGLIPSEMPIGLSDVDLSHNNLIGFIPSSILKCPYIQNVDLSYNLLYGTISSQIHCVYHLQLSHNFLNGEIPFLPEIDSALNSLDLSYNNLTGKLPKELAALSYINLSYNSFDFSQDLDSNSRLPDYCSFKKDSIISYHMPNFTSCHFVHHRNFFHQTNPLASKNKLLLLIFLPTICFILFVLLSVFYFARLMLKNKPEERSTNNGDLFSIWNYDGKIAFEDIIEATEDFHLKYCIGTGAYGSVYRAQLPSGNIVALKKLHQMESQNPTFDKSFRNEVKMLTEICHKNIVKLHGYCLHNRSMFLVYQYMERGSLFYVLNNDVEAEELNWSMRVNIIKGMAHALSYMHHDCTPPIIHRDVTTSNVLLNSQLEAFVSDFGTARLLDPHSSNQTLVVGTYGYVAPELAYTLKVTEKCDVYSFGVVALETLMGRHPRELLSSLSNPSNQNFLLKDLLDSRLPLPSSQKDAQDIVLVGTIALACLCSKPKFRPSMQQVARKLSCYKLSLPLPLYEISIHLLMSQEI* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1460 714 PANTHER OS10G0467900 PROTEIN 8 152 - -
Apr10g1460 714 PANTHER OS10G0467900 PROTEIN 153 690 - -
Apr10g1460 714 PANTHER OS10G0467900 PROTEIN 107 247 - -
Apr10g1460 714 SUPERFAMILY Protein kinase-like (PK-like) 402 690 IPR011009 -
Apr10g1460 714 Gene3D Transferase(Phosphotransferase) domain 1 502 696 - -
Apr10g1460 714 Pfam Protein kinase domain 424 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1460 714 Gene3D Ribonuclease Inhibitor 205 317 IPR032675 -
Apr10g1460 714 Gene3D Ribonuclease Inhibitor 101 204 IPR032675 -
Apr10g1460 714 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 8 152 - -
Apr10g1460 714 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 107 247 - -
Apr10g1460 714 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 153 690 - -
Apr10g1460 714 ProSiteProfiles Leucine-rich repeat profile. 134 156 IPR001611 GO:0005515
Apr10g1460 714 Pfam Leucine Rich Repeat 134 154 IPR001611 GO:0005515
Apr10g1460 714 SUPERFAMILY L domain-like 10 244 - -
Apr10g1460 714 PRINTS Leucine-rich repeat signature 39 52 - -
Apr10g1460 714 PRINTS Leucine-rich repeat signature 132 145 - -
Apr10g1460 714 ProSitePatterns Protein kinases ATP-binding region signature. 429 451 IPR017441 GO:0005524
Apr10g1460 714 ProSiteProfiles Protein kinase domain profile. 423 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1460 714 ProSitePatterns Tyrosine protein kinases specific active-site signature. 547 559 IPR008266 GO:0004672|GO:0006468
Apr10g1460 714 Gene3D Ribonuclease Inhibitor 3 100 IPR032675 -
Apr10g1460 714 Gene3D Phosphorylase Kinase; domain 1 386 501 - -
Apr10g1460 714 Pfam Leucine Rich repeats (2 copies) 37 73 IPR025875 -
Apr10g1460 714 SMART LRR_typ_2 132 156 IPR003591 -
Apr10g1460 714 SMART LRR_typ_2 36 60 IPR003591 -
Apr10g1460 714 SMART LRR_typ_2 84 108 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1460 Apr-Chr10 27008009 27010388 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1460 15 595 Receptor kinase-like Gene Family AT4G08850 37.942 8.54e-125 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr10g1460 Pkinase 4.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1460 - - aprc:113851126 1004.59