Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1459 ATGGGCAGTTCAGTGGCAGTGACACTTTTCTCTGCCATGCTCATGATCATGCTAATGCCCACTTGCACCGCACTTTCCAATATAAATAAAGAAAAACACGCTCTGCTCCAAACGGGTTGGTGGAGTCATTACGCGAATATCTCAAACCATTGTGAATGGGTGGGCATCACATGCAATGAAGATGGAAGCATTAGTTCTATTTCCGGATGGGAATTAAATAATGCGTATCCGTTATCAGAAGAAATGCTGGAGATTGGGAAGTTGAACTTCACTGCCTTCCCCAAATTAGTGCATCTAGACATTAGCGGAATGGGACTTAGAGGAAGCATCCCCAAAGAAATAACCACACGTACAATGCTTGAAGTTCTTGACCTGTCCAACAATCACCTTCGTGGTCCTATACCCCTCCAACTTGCCAATTTCACACGTTTGAAGGAATTGTTTCTCTATAACAATTCCCTGTCCGGTTCAATCCCTTCTACGTTGGCTCAATTGAAGAATTTAATATATCTCTATCTTCATTCAAACCAATTTCAAGGTCCTATTCCAATGGAACTGGGGAATCTGACAATATTGACAGGTTTAGGTCTCTCACATAATTCACTTTCCGGTTCAATTCCTTCTACATTGGCTCAATTGAAGAATTTAATCTCTCTCCATCTTGATTCAAACCAATTTCAAGGTCCTATTCCAACGGAACTAGGGAATCTGACACAATTGGAAATATTAGATCTCTCACATAATTCACTTTCCGGTTCAATCCCTTCCATGCTGGGTCAATGGAAGAATTTAACCTATCTGTACCTTCCTTCAAACCAATTTGAAGGTCCTATTCCAATGGAACTGGGGAATCTGACACAATTGCAAGAATTAGATCTCTCACATAATTCTCTTTCCGGTTCAATCCCTTCCACGTTGGGTCAATTGAAGAATTTAATCTATCTCTGTCTTGATTCAAACCAATTTCAAGGTCCTATTGCAATGGAACTGGGGAATCTGACACAATTGAAAGTATTATATCTCTCACATAATTCACTTTCCGGTTCAGTCCCTTCCACGTTGGGTCAATTGAAGAATTTAACCTATCTCTACCTTGATTCAAACCAATTTGAAGGTCCCATACCAATAGAAGTAGTGAACTTGACACTTTTACAACACTTAAATCTTTCCCACAATCACCTCACCGGCTCTATCCCATCTCCTATCCTGAATTATCCACTTGCAACAGTGGATTTAAGCTGTAACTTGTTAAATGGAAGCATCACTTCCCAAATTGGTTGGGTCATTGACCTTAACCTTAGTCATAATTTTTTCAGCGGCCCGGTTCCACCTGTTTTTGGAATAAATTCTACGGTGGATAGGTTGGATCTTAGTTATAATAATCTCACTAGTAAGTTACATAAGGAGCTTGCTAATTTAGGATATATAAATCTTTCATATAATTTTTTTGACTTCTCAGAAAACCTTGACTCACAGTCTCAATTACCAGACTTTTGTTCTTTCCCAAAAAATGCACTTATCACTTACTACCCACCAAATTACACAGCTTGTCATTATGTCTACCAAACCAATTCTCAAACTAGTACAACAACTAGTAAAGTAAATAGTACAACAACTAGTAAAGTAAAAACTATCATTGTAATTGCTCTTCCTATCACTTGCATCATTCTTTCTGTACTTGCAACATTATATTTCCTAAAGTGTAAGAATGAGGCCAAATTTGAAGGAAGATCAACAAAGAATGGAGACTTCTTTTCTATATGGAACTATGACGGTAAAATTGCATTTGAAGACATCATTGAAGCAACTGAGGACTTTCACCTCAAGTACTGCATTGGAACAGGTGCATATGGTAGTGTCTATAAAGCACAATTGCCTAGCGGTAACATTGTTGCATTGAAGAAACTTCACCAAATGGAATCCCAAAATCCAGCTTTTGACAAGAGTTTTCGCAATGAGGTCAAGATGTTAACTGGAATACGCCACAAAAACATTGTGAAGCTTCATGGATATTGCCTTCACAATCGTAGCATGTTTCTTGTCTACCAATACATGGAAAGAGGTAGCTTATTTTATGTCTTGAACAACGATGTGGAAGCTGAGGAGTTGAATTGGAGTATGAGGGTGAATATCATTAAAGGAATGGCACATGCTTTGTCCTACATGCATCATGATTGTACCCCACCAATTGTTCATCGTGATGTAACAACTAGCAATGTTTTATTGAACTCACAATTGGAGGCTTTTGTTTCAGACTTTGGCACTGCTAGACTCCTTGATCCTCATTCCTCCAATCAAACCTTAGTAGTCGGCACTTATGGCTATGTTGCCCCAGAGCTTGCATACACATTGAAGGTGACAGAAAAATGTGATGTTTACAGTTTTGGAGTTGTGGCTTTGGAAACATTAATGGGAAGGCATCCAGGACAGCTACTCTCATCTTTATCAAACCTATCTAATCAAAACTTCCTGTTGAAGGATCTCTTGGATTCACGTCTTCCCCTTCCTTCCAGTCAAAAAGATGCTCAAGATATTGTACTTGTGGGAACAATAGCATTAGCATGTTTGTGTTCCAAACCAAAGTTCAGACCATCAATGCAACAAGTGGCTAGGAAACTCTCTTGTTCCAAATTGTCACTGCCTTTGCCTTTGTATGAGATTTCAATCCATCTCTTAATGTTTCAAGAAATATGA 2694 0.3879 MGSSVAVTLFSAMLMIMLMPTCTALSNINKEKHALLQTGWWSHYANISNHCEWVGITCNEDGSISSISGWELNNAYPLSEEMLEIGKLNFTAFPKLVHLDISGMGLRGSIPKEITTRTMLEVLDLSNNHLRGPIPLQLANFTRLKELFLYNNSLSGSIPSTLAQLKNLIYLYLHSNQFQGPIPMELGNLTILTGLGLSHNSLSGSIPSTLAQLKNLISLHLDSNQFQGPIPTELGNLTQLEILDLSHNSLSGSIPSMLGQWKNLTYLYLPSNQFEGPIPMELGNLTQLQELDLSHNSLSGSIPSTLGQLKNLIYLCLDSNQFQGPIAMELGNLTQLKVLYLSHNSLSGSVPSTLGQLKNLTYLYLDSNQFEGPIPIEVVNLTLLQHLNLSHNHLTGSIPSPILNYPLATVDLSCNLLNGSITSQIGWVIDLNLSHNFFSGPVPPVFGINSTVDRLDLSYNNLTSKLHKELANLGYINLSYNFFDFSENLDSQSQLPDFCSFPKNALITYYPPNYTACHYVYQTNSQTSTTTSKVNSTTTSKVKTIIVIALPITCIILSVLATLYFLKCKNEAKFEGRSTKNGDFFSIWNYDGKIAFEDIIEATEDFHLKYCIGTGAYGSVYKAQLPSGNIVALKKLHQMESQNPAFDKSFRNEVKMLTGIRHKNIVKLHGYCLHNRSMFLVYQYMERGSLFYVLNNDVEAEELNWSMRVNIIKGMAHALSYMHHDCTPPIVHRDVTTSNVLLNSQLEAFVSDFGTARLLDPHSSNQTLVVGTYGYVAPELAYTLKVTEKCDVYSFGVVALETLMGRHPGQLLSSLSNLSNQNFLLKDLLDSRLPLPSSQKDAQDIVLVGTIALACLCSKPKFRPSMQQVARKLSCSKLSLPLPLYEISIHLLMFQEI* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1459 897 SUPERFAMILY Protein kinase-like (PK-like) 588 873 IPR011009 -
Apr10g1459 897 PANTHER OS02G0553000 PROTEIN 175 326 - -
Apr10g1459 897 PANTHER OS02G0553000 PROTEIN 320 873 - -
Apr10g1459 897 PANTHER OS02G0553000 PROTEIN 258 403 - -
Apr10g1459 897 PANTHER OS02G0553000 PROTEIN 89 257 - -
Apr10g1459 897 SMART LRR_typ_2 237 261 IPR003591 -
Apr10g1459 897 SMART LRR_typ_2 333 357 IPR003591 -
Apr10g1459 897 SMART LRR_typ_2 141 165 IPR003591 -
Apr10g1459 897 SMART LRR_typ_2 381 405 IPR003591 -
Apr10g1459 897 SMART LRR_typ_2 285 309 IPR003591 -
Apr10g1459 897 SMART LRR_typ_2 189 213 IPR003591 -
Apr10g1459 897 ProSitePatterns Protein kinases ATP-binding region signature. 612 634 IPR017441 GO:0005524
Apr10g1459 897 PRINTS Leucine-rich repeat signature 240 253 - -
Apr10g1459 897 PRINTS Leucine-rich repeat signature 285 298 - -
Apr10g1459 897 Pfam Protein kinase domain 607 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1459 897 Pfam Leucine Rich Repeat 239 256 IPR001611 GO:0005515
Apr10g1459 897 Pfam Leucine Rich Repeat 384 402 IPR001611 GO:0005515
Apr10g1459 897 Pfam Leucine Rich Repeat 287 307 IPR001611 GO:0005515
Apr10g1459 897 Gene3D Ribonuclease Inhibitor 23 161 IPR032675 -
Apr10g1459 897 Gene3D Phosphorylase Kinase; domain 1 569 684 - -
Apr10g1459 897 Pfam Leucine rich repeat 332 370 IPR001611 GO:0005515
Apr10g1459 897 Gene3D Ribonuclease Inhibitor 256 518 IPR032675 -
Apr10g1459 897 Gene3D Ribonuclease Inhibitor 162 255 IPR032675 -
Apr10g1459 897 ProSiteProfiles Leucine-rich repeat profile. 287 309 IPR001611 GO:0005515
Apr10g1459 897 Gene3D Transferase(Phosphotransferase) domain 1 685 879 - -
Apr10g1459 897 ProSiteProfiles Protein kinase domain profile. 606 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1459 897 ProSitePatterns Tyrosine protein kinases specific active-site signature. 730 742 IPR008266 GO:0004672|GO:0006468
Apr10g1459 897 SUPERFAMILY RNI-like 98 473 - -
Apr10g1459 897 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 175 326 - -
Apr10g1459 897 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 320 873 - -
Apr10g1459 897 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 258 403 - -
Apr10g1459 897 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 89 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1459 Apr-Chr10 26996344 26999530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1459 84 778 Receptor kinase-like Gene Family AT4G08850 38.323 1.25e-145 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr10g1459 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1459 - - aprc:113851126 1419.45