LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g1420	ATGGGCAGAGGGAGGGTTGAGCTGAAGAGGATAGAGAACAAAATCAACCGCCAAGTTACTTTCTCAAAAAGAAGGAACGGTTTGCTCAAGAAAGCCTATGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCCCTCATCATTTTTTCAAGCCGTGGAAAGCTCTATGAATTTGGAAGTGTTGGCATTACCAAAACTATTGAGCGATACCAACGTTGCTCTTTTACTCCTCAAGATGACCATGTTGAATGTGAAACTCAGAGCTGGTACCAAGAGGTGTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAAAGGACTCAAAGGCATTTGCTTGGGGAAGATCTTGGACCACTGAGCATAAAGGAACTGCAGAATCTTGAGAAACAGCTTGAAGGAGCTTTAGCACAAGCTAGGCAAAGGAAGACACAAATTATGATTGAACAAATGGAAGAGCTTCGCAGAAGGGAACGCCACCTTGGAGACATGAATAAGCAACTTAGACTCAAGCTTGAAGCAGAAGGATTTAATCTTAAGGCTATGGAAAGCTTATGGAGCTCTACTTCAGCTGCTGGAAATAGCAGCTTTCCCTTTCAACCAGCTCAAACCAACCCTATGGATTACCAGGCAGAACCCTTTTTGCAAATAGGGTACCATCAATATGTTCAAGCCGAGGCATCTAATGTTCCTAAGAGCATGGCTTGTGAGACTAACTTCATGCAAGGATGGATCCTTTGA	732	0.4358	MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGITKTIERYQRCSFTPQDDHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRRRERHLGDMNKQLRLKLEAEGFNLKAMESLWSSTSAAGNSSFPFQPAQTNPMDYQAEPFLQIGYHQYVQAEASNVPKSMACETNFMQGWIL*	244

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g1420	243	Gene3D	-	13	80	IPR036879	GO:0003677\|GO:0046983
	Apr10g1420	243	PANTHER	MADS-BOX TRANSCRIPTION FACTOR 17	1	229	-	-
	Apr10g1420	243	PANTHER	MADS BOX PROTEIN	1	229	-	-
	Apr10g1420	243	Pfam	K-box region	84	169	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Apr10g1420	243	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Apr10g1420	243	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Apr10g1420	243	Coils	Coil	119	142	-	-
	Apr10g1420	243	SUPERFAMILY	SRF-like	2	81	IPR036879	GO:0003677\|GO:0046983
	Apr10g1420	243	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Apr10g1420	243	ProSiteProfiles	K-box domain profile.	85	175	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Apr10g1420	243	Coils	Coil	148	168	-	-
	Apr10g1420	243	CDD	MADS_MEF2_like	2	73	IPR033896	GO:0000977\|GO:0045944
	Apr10g1420	243	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Apr10g1420	243	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Apr10g1420	243	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Apr10g1420	243	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g1420	Apr-Chr10	26501908	26507959	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr10g1420	1	243	MADS-box Gene Family	AT2G45650	65.873	1.41e-116	332

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Apr10g1420		K-box	7e-31	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g1420	K09264		-	gmx:100820061	451.44

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr10g1420	10	26501908	26507959	Apr10g1420	10	26501908	26507959	ECH
	Apr10g1420	10	26501908	26507959	Apr4g2190	4	31004763	31009838	ECH
	Apr10g1419	10	26472256	26496043	Apr10g1420	10	26501908	26507959	ECH