Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1419 ATGGTGAGAGGAAAGACACAGATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTAACATTCTCAAAGCGCCGTAATGGGTTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGTGATGCTGAGGTTGCTCTTATTATCTTCTCTCCAAGAGGGAAGCTTTATGAATTTGCTAGCTCCAGCATGCAGGGGTCAATTGAGCGATACCGCAGGCACACCAAGGATAACAATCCAGCTACACTTAGATCAATAGAACAAAATATGCAGTATTTGAAGCAAGAAGCAGCAAACATGATGAAGAAGATTGACCTTCTTGAAGCTTCAAAAAGAAAACTCATGGGAGAAGGTTTGGGATCTTGCTCTATTGATGAACTGCAGCGGATGGAACAACAATTGGAGAGGAGTTTAAGCAATGTTAGAGCAAGAAAGACTCAGTTTTTCAGGGAACAAGTTGAGCAACTAAAAGAAAAGGAAAAAGCCCTAGTTGATGAAAATGCCAGGCTCTCTGAGAAGTGTGGTATGCAATCACAGCCAGCAACACGGGGAGAAAATCAACCCCAATCCTATACAGAAAGTTCTCCAAGTTCAGATGTGGAGACAGAATTGTTCATTGGACTTCCAGATACAAGAACAAAGCGCATCCCTACTCAGGCCTAG 657 0.4353 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQGSIERYRRHTKDNNPATLRSIEQNMQYLKQEAANMMKKIDLLEASKRKLMGEGLGSCSIDELQRMEQQLERSLSNVRARKTQFFREQVEQLKEKEKALVDENARLSEKCGMQSQPATRGENQPQSYTESSPSSDVETELFIGLPDTRTKRIPTQA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1419 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr10g1419 218 Gene3D - 14 101 IPR036879 GO:0003677|GO:0046983
Apr10g1419 218 MobiDBLite consensus disorder prediction 169 218 - -
Apr10g1419 218 PANTHER MADS BOX PROTEIN 1 208 - -
Apr10g1419 218 Coils Coil 122 171 - -
Apr10g1419 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr10g1419 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr10g1419 218 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Apr10g1419 218 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Apr10g1419 218 PANTHER MADS-BOX PROTEIN SOC1 1 208 - -
Apr10g1419 218 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr10g1419 218 Coils Coil 81 115 - -
Apr10g1419 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr10g1419 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr10g1419 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr10g1419 218 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr10g1419 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr10g1419 218 MobiDBLite consensus disorder prediction 170 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1419 Apr-Chr10 26472256 26496043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1419 1 159 MADS-box Gene Family AT2G45660 75.926 1.03e-85 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr10g1419 K-box 5.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1419 - - gmx:100807963 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1419 10 26472256 26496043 Apr10g1419 10 26472256 26496043 ECH
Apr10g1419 10 26472256 26496043 Apr10g1420 10 26501908 26507959 ECH
Apr10g1419 10 26472256 26496043 Apr4g2190 4 31004763 31009838 ECH