Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1416 ATGGGTTCTTCAATCATCTTCCTACCGTTTCTTCTTTTGCTTTTCCATTTGGAACCTTCATCGGCATTCTCACTCTCCGTCGAGAATCTGGAAAAAGACATCATAGTCTCATCACCGAAGGGAACGTTCACTGCAGGGTTCACTCCCGTAGGTGAAAATGCTTACTGCTTCGCCATATGGTTCACCAAACCACCTCGTACAACCGTGGTTTGGATGGCCAACCGTGACCAACCGGTAAACGGAAAACGGTCAACACTTTCTCTTCTCAAGACCGGCAACCTCGAATTAACCGACGCAGGGCAGTCCAACGTTTGGTCCATCAACACTCTTTCTGCCGAACCTCTTGAGTTGCATTTGTTCGACACCGGCAACCTCGTCCTCCGACAACAGAACAATCAAAGCTCCGTTCTGTGGCAAAGCTTCGATTTCCCCACCGATACGCTCCTTCCTGGTCAACCTCTCACTAGGTTTACGAAGCTTGTTTCCTCAAGAAGTGAGAGCAACTATTCCTCTGGTTTTTACAACCTCTTCTTCGACAATGACAACGTTTTCCGTCTTCTCTACGAAGGCCCTCAAGTTTCAAGTGTTTACTGGCCAGATCCTTGGCTTGTAAGCAACAACGTTGGTAGTGGTAACGGTAGATCCACTTACAACAGTAGCAGGGTTGCAGTGCTTGATACTTATGGACAATTCAGTTCTTCTGATCATTTCAGTTACAAGACAATTGATTATGGGAAATTGCTTCAACGAAGACTCACCCTTGATCATGATGGTAATGTTCGTTTGTATAGTCGAAATGATGGACAGGAGAATTGGTCAATATCTGGACAATTTAAGTCACAACCTTGTTTCATTCATGGGATTTGTGGACCCAATAGTATTTGCGTTTATGACCAAAAAAGTGGTAGAAAGTGTTTATGTCTTCAAGGGTATAGTTGGGTTGATGATCAAGATTGGTCTCTAGGTTGCAAACCCAATTTCCAACCTTCATGTGACAACAAAACTGAGTATGGTTTTCTACCCTTAGATGAAGTTGATTTTTATGGATATGACTATGGATCATCTTTTTCGAATTACACTTATAAACAATGTGAGAGTTTGTGCTTGCAATTGTGCGAGTGCATGGGATTTCAGTACACCTTTGGTCTTGAGAATGGCCTTTTTTGGTGTTACCCAAAGACACAGTTGCTAAATGGGCATCACTCACCGGGTTTCTCAGGAACAATCTTCTTGCGGTTGCCGAAAAGCTATGCTCATGGGAACCCCGTTGATGTTAACAATGGCTTGGCTTGTGAGAGAAATGGTGTGGCAAAACAACTAGAAAGACCATATGTCAAAGGCAAAGAAAATGGCTCTGTGAAGTTCATGCTTTGGTTTGCGGTTGGGTTAGGAGTGGTTGAAATAATGTGCATCTTTTTGGTGTGGTGTTTCTTATTTAGGAACAACGAACATAGTGCAGATAAACAAGGTTATGTTCTTGCAGCAGCAACCGGGTTTCGGAGATTCAGTTACTCTGAGCTTAAACAAGCCACTAAAGGTTTCAGTCTAGAGATTGGAAGGGGTGCTGGAGGAATTGTATATAAGGGTGTGTTATCAGATCATAGAGTTGCTGCAATAAAGAGACTACATGAATTTGCAAACCAAGGTGAAAGTGAGTTTCTTGCTGAAGTAAGCATTATTGGTAGGCTTAACCACATGAACTTAATTGGCATGTGGGGGTATTGTGCTGAGGGTAAGCATAGGTTGTTGGTCTATGAGTACATGGAAAATGGTAGTTTAGCTCAAAATCTTTCATCAAATGGACTTGATTGGAGTAAGAGGTATAACATTGCTCTAGGAATGGCAAGGGGTTTGGCCTATTTACATGAAGAATGCTTGGAGTGGATTTTGCATTGTGACATAAAGCCACAGAACATACTTCTTGACACTGATTATCAACCTAAGGTAGCTGATTTTGGCTTGTCTAAGCCATTAGATAGAAACACCCTCAACCATTCGAGTTTTTCAAGGATAAGAGGAACACGAGGTTACATGGCACCGGAATGGGTTTTCAACATGCAAATCACTTCCAAAGTGGATGTTTTTAGCTATGGAATTGTTGTGTTGGAGATGATAACTGGAAGGAGCCCAACAACAGGTGTCCAAATAACTGAATTAGGAGCAGAGTCACATCATGAGAGGTTGTCAACATGGGTGAGGGAAAAGAGGAGGAAAGCATCACAAGTTGCATCATGGGTGAAACAAATTGTTGACCCTTCTTTGGGATCAAATTATGATGTGAACCAATTGGAGATATTGGCAACAGTGGCTTTGGAATGTGTGGAGGAAGAGAAGGATGTGAGACCCAGCATGAGTCAAGTTGCTGAAAGGCTCCAAAGTCATGAACATGATTCTTGA 2397 0.4255 MGSSIIFLPFLLLLFHLEPSSAFSLSVENLEKDIIVSSPKGTFTAGFTPVGENAYCFAIWFTKPPRTTVVWMANRDQPVNGKRSTLSLLKTGNLELTDAGQSNVWSINTLSAEPLELHLFDTGNLVLRQQNNQSSVLWQSFDFPTDTLLPGQPLTRFTKLVSSRSESNYSSGFYNLFFDNDNVFRLLYEGPQVSSVYWPDPWLVSNNVGSGNGRSTYNSSRVAVLDTYGQFSSSDHFSYKTIDYGKLLQRRLTLDHDGNVRLYSRNDGQENWSISGQFKSQPCFIHGICGPNSICVYDQKSGRKCLCLQGYSWVDDQDWSLGCKPNFQPSCDNKTEYGFLPLDEVDFYGYDYGSSFSNYTYKQCESLCLQLCECMGFQYTFGLENGLFWCYPKTQLLNGHHSPGFSGTIFLRLPKSYAHGNPVDVNNGLACERNGVAKQLERPYVKGKENGSVKFMLWFAVGLGVVEIMCIFLVWCFLFRNNEHSADKQGYVLAAATGFRRFSYSELKQATKGFSLEIGRGAGGIVYKGVLSDHRVAAIKRLHEFANQGESEFLAEVSIIGRLNHMNLIGMWGYCAEGKHRLLVYEYMENGSLAQNLSSNGLDWSKRYNIALGMARGLAYLHEECLEWILHCDIKPQNILLDTDYQPKVADFGLSKPLDRNTLNHSSFSRIRGTRGYMAPEWVFNMQITSKVDVFSYGIVVLEMITGRSPTTGVQITELGAESHHERLSTWVREKRRKASQVASWVKQIVDPSLGSNYDVNQLEILATVALECVEEEKDVRPSMSQVAERLQSHEHDS* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1416 798 SUPERFAMILY alpha-D-mannose-specific plant lectins 55 200 IPR036426 -
Apr10g1416 798 Pfam S-locus glycoprotein domain 233 312 IPR000858 GO:0048544
Apr10g1416 798 ProSitePatterns Protein kinases ATP-binding region signature. 518 540 IPR017441 GO:0005524
Apr10g1416 798 SUPERFAMILY Protein kinase-like (PK-like) 495 792 IPR011009 -
Apr10g1416 798 Gene3D Transferase(Phosphotransferase) domain 1 588 798 - -
Apr10g1416 798 ProSiteProfiles Protein kinase domain profile. 512 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1416 798 Pfam D-mannose binding lectin 68 156 IPR001480 -
Apr10g1416 798 Gene3D Phosphorylase Kinase; domain 1 478 587 - -
Apr10g1416 798 ProSiteProfiles Bulb-type lectin domain profile. 21 140 IPR001480 -
Apr10g1416 798 SMART blect_4 27 144 IPR001480 -
Apr10g1416 798 CDD B_lectin 37 144 IPR001480 -
Apr10g1416 798 CDD STKc_IRAK 518 792 - -
Apr10g1416 798 SMART serkin_6 512 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1416 798 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 4 798 - -
Apr10g1416 798 Gene3D - 26 142 IPR036426 -
Apr10g1416 798 Pfam Protein kinase domain 517 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1416 798 CDD PAN_AP_plant 327 414 - -
Apr10g1416 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Apr10g1416 798 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 4 798 - -
Apr10g1416 798 PIRSF SRK 1 798 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1416 Apr-Chr10 26407363 26411276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1416 502 795 Trihelix Transcription Factor Family AT5G38560 44.147 7.30e-68 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Apr10g1416 Pkinase 3.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1416 - - gmx:100806357 1331.24