Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1413 ATGGACAATTATGGGTCTTCACCACCTCCATATGGGTATCCAAACCCTGGATACACTCCTCCATACCCTCCTCCTGAATCACATGCACCTCCACCATATCCATATCCATATCCATATCCAAATCCAAATCCATATGCACATGCACCCAATCCTTCACAATCTTTCAACTACACCTACCCTCCACCCTCCTCAGCCCCTTATTCTAGCAACATTGACTATTCCTACCCACCACCACCACCCTCCTCAGCCCCTTATTCTAGCAACATTGACTATTCCTACCCACCACCACCACCTCCACCTCCACCTCCTCCATCGAACCCTTCAGATGGATCCTTAGACTTTCCAAGGCCTCAACCACCTCATTCTTATGGTTACCCTTACCAGACTAGTGATAGTTTTAACCCTCCGCAGAGTTCTGCTTACCCTCCTTTGGATGATCTTATGAGTAATGTTAGGGTGTCTGATAATCTCCCTAGTGCACCTCCATTGACACATTCAATTTCAGCTCCAGATCAAGAGAAGAAAGATGAGTTTGATGGTTATTCTAGTAGCTCCTTCTCGGGTTCGGATCGCGGGTATCCTTCTTACCCTTCAGTTTATGCTGATGATTCAGTGCATAGTCAGGGTTTGCAGATTGTGCCAGCTCAGAACAAAGGGTCACTAAGGGTTTTGCTGCTGCATGGAAATTTTGATATTTGGATTCATGGAGCCAAAAATCTTCCAAATATGGACATGTTTCATAAGACTTTGGGGGATATGTTTGGTAGATTACCTGGTAATGTGAACAACAAGATTGAAGGATCAGTGAGCCGGAAGATCACTAGTGATCCTTATGTGGCAATCTCTGTGTCAAATGCTGTGATTGGGAGAACTTTTGTGATTAGCAACAGTGAGAACCCTGTGTGGGAGCAGCATTTCTTTGTTCCTGTTGCACATCATGCTGCTGAAGTACACTTTGTTGTTAAGGACAGTGATGTGGTGGGTTCACAGCTCATTGGCACAGTGGCAATTCCTCTGGAGCAAATATACTCAGGAGAAAAAATACAAGGGACCTACCCTATCCTGAATAACAATGGGAAGCCTTGTAAGCCAGGTGCTGTCTTGACTGTATCCATTCAGTACATTCCAATGGAGAAACTGAGCATTTATCATCAAGGAATTGGAGCAGGCCCTGACTACAGTGGCGTTCCTGGGACGTATTTTCCATTGAGGAAAGGTGGAACTGTAACTCTTTATCAGGATGCTCATGTTCCGGACGGTTGCCTCCCTAATGTGATGCTTGACAATGGCATGTATTATGGTCATGGAAAGTGTTGGCATGACATATTTGATGCCATAAGTCGTGCTAAATGGTTGGTTTACATTACCGGTTGGTCAGTGTGGCACAAAGTTAGGTTGGTAAGGGACGAAAGGCGGGCATTAAATTTCACCCTGGGTGATCTTTTGAGGTCCAAGTCACAGGAGGGAGTTAGAGTGCTTCTCCTTGTTTGGGATGACCCTACGTCAAGAAGCATTCTCGGTTACAGAACAGATGGGGTCATGGCAACTCATGATGAGGAAACACGACGATTTTTCAAGCACTCTTCTGTACAAGTGCTGCTTTGTCCTCGCATTGCAGGAAAACGACATAGCTGGGCAAAACAAAAGGAAGTTGAAACAATATATACACATCATCAGAAAACTGTAATTGTGGATGCTGATGCTGGAAATAACAAAAGAAAAATTGTAGCATTTGTTGGTGGACTTGATTTGTGTGACGGGCGATATGATACTCCTCACCATCCTCTCTTCAGGACGCTGCAGACGCTGCATAAGGATGACTACCACAACCCTACTTTCACAGGTAATACTGGTGGTTGTCCAAGGGAGCCATGGCATGACTTACATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTGACCAACTTTGAGGAGCGATGGTTAAGAGCTGCAAAACCTAAAGGGATTAAAAAGCTGAAGAGTTCATATGATGATGCACTACTAAAGCTAGATAGAATTCAAGATATTATCAGTGCATATAATGCTCCTAGTGTTGTTGGTGATGATAATCCTGAAGCATGGCATGTTCAGATATTCCGTTCAATTGATTCAAATTCTGTTGATGGATTTTCAGAGGAGGCAAAAAATGCATCAAGCATGAACCTAGTATGTGGGAAGAATGTGCTGATTGACATGAGCATACATAATGCATATGTGAAGGCCATTCGAGCTGCACAACATTACATATATATAGAGAATCAATATTTCATTGGGTCTTCTTATAACTGGAATCAACATAAAGACCTTGGTGCCAATAATTTAATTCCTATGGAAATTGCACTGAAGATTGCTGAAAAGATAAGGGCAAATGAGCGATTTGCAGTGTATATCGTAATTCCAATGTGGCCAGAGGGTGTTCCAACAGGGGCTGCCACCCAAAGAATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTACGAGACAATTTACAAGGCTTTGGTTGAAGTTGGGCTTGAGGCAGCTTTCTCTCCGCAAGACTATTTGAACTTCTTCTGTCTTGGTAATCGGGAGGCTGTAGATATGCATGAGAATATCACTGTGTCTGGAACCCCTCCTCCAGCAAATAGTCCACAAGCAATTAGCAGAAATAATCGACGTTTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTTATATTGGGGTCTGCAAACATCAACCAGCGCTCCATGGACGGAACAAGGGACACTGAAATTGCAATGGGAGCCTACCAACCCCGTTATACCTGGGCAAGGAATCACTGTTATCCACGGGGAGAGATCCACGGATATAGGATGTCACTTTGGGCAGAACATACTGGTACAATTGAAGACTGCTTCTTACAACCAGAGAGCCTGGAATGTGTGAGAAGGGTTAGAACAATGGGTGAACATAACTGGAAACAATTTTCTGCAAATGATATAACAGAGATGAGAGGTCATCTGCTCAAGTACCCAGTCGAGGTTGATCGGAAGGGTAAGGTTAGACCCCTTCCTGGCCATGAAGAGTTCCCAGATGTAGGAGGAAAGATAGTAGGATCATTTATTGCCATTCAGGAGAATTTAACCATTTGA 3132 0.4333 MDNYGSSPPPYGYPNPGYTPPYPPPESHAPPPYPYPYPYPNPNPYAHAPNPSQSFNYTYPPPSSAPYSSNIDYSYPPPPPSSAPYSSNIDYSYPPPPPPPPPPPSNPSDGSLDFPRPQPPHSYGYPYQTSDSFNPPQSSAYPPLDDLMSNVRVSDNLPSAPPLTHSISAPDQEKKDEFDGYSSSSFSGSDRGYPSYPSVYADDSVHSQGLQIVPAQNKGSLRVLLLHGNFDIWIHGAKNLPNMDMFHKTLGDMFGRLPGNVNNKIEGSVSRKITSDPYVAISVSNAVIGRTFVISNSENPVWEQHFFVPVAHHAAEVHFVVKDSDVVGSQLIGTVAIPLEQIYSGEKIQGTYPILNNNGKPCKPGAVLTVSIQYIPMEKLSIYHQGIGAGPDYSGVPGTYFPLRKGGTVTLYQDAHVPDGCLPNVMLDNGMYYGHGKCWHDIFDAISRAKWLVYITGWSVWHKVRLVRDERRALNFTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYRTDGVMATHDEETRRFFKHSSVQVLLCPRIAGKRHSWAKQKEVETIYTHHQKTVIVDADAGNNKRKIVAFVGGLDLCDGRYDTPHHPLFRTLQTLHKDDYHNPTFTGNTGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRAAKPKGIKKLKSSYDDALLKLDRIQDIISAYNAPSVVGDDNPEAWHVQIFRSIDSNSVDGFSEEAKNASSMNLVCGKNVLIDMSIHNAYVKAIRAAQHYIYIENQYFIGSSYNWNQHKDLGANNLIPMEIALKIAEKIRANERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEVGLEAAFSPQDYLNFFCLGNREAVDMHENITVSGTPPPANSPQAISRNNRRFMIYVHSKGMIVDDEYVILGSANINQRSMDGTRDTEIAMGAYQPRYTWARNHCYPRGEIHGYRMSLWAEHTGTIEDCFLQPESLECVRRVRTMGEHNWKQFSANDITEMRGHLLKYPVEVDRKGKVRPLPGHEEFPDVGGKIVGSFIAIQENLTI* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1413 1043 SUPERFAMILY Phospholipase D/nuclease 397 652 - -
Apr10g1413 1043 MobiDBLite consensus disorder prediction 42 192 - -
Apr10g1413 1043 SMART C2_3c 229 351 IPR000008 -
Apr10g1413 1043 MobiDBLite consensus disorder prediction 152 166 - -
Apr10g1413 1043 PANTHER PHOSPHOLIPASE D ALPHA 1 144 1043 - -
Apr10g1413 1043 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 226 377 IPR035892 -
Apr10g1413 1043 Pfam Phospholipase D Active site motif 554 588 IPR001736 GO:0003824
Apr10g1413 1043 Pfam Phospholipase D Active site motif 890 916 IPR001736 GO:0003824
Apr10g1413 1043 MobiDBLite consensus disorder prediction 123 139 - -
Apr10g1413 1043 Gene3D Endonuclease Chain A 427 672 - -
Apr10g1413 1043 MobiDBLite consensus disorder prediction 9 27 - -
Apr10g1413 1043 Gene3D Endonuclease Chain A 698 937 - -
Apr10g1413 1043 ProSiteProfiles C2 domain profile. 206 352 IPR000008 -
Apr10g1413 1043 Gene3D C2 domain 223 363 IPR035892 -
Apr10g1413 1043 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 889 916 IPR001736 GO:0003824
Apr10g1413 1043 SUPERFAMILY Phospholipase D/nuclease 735 975 - -
Apr10g1413 1043 MobiDBLite consensus disorder prediction 1 27 - -
Apr10g1413 1043 MobiDBLite consensus disorder prediction 48 71 - -
Apr10g1413 1043 MobiDBLite consensus disorder prediction 72 122 - -
Apr10g1413 1043 CDD C2_plant_PLD 223 375 - -
Apr10g1413 1043 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 553 588 IPR001736 GO:0003824
Apr10g1413 1043 SMART pld_4 889 916 IPR001736 GO:0003824
Apr10g1413 1043 SMART pld_4 553 588 IPR001736 GO:0003824
Apr10g1413 1043 PANTHER PHOSPHOLIPASE D 144 1043 IPR015679 -
Apr10g1413 1043 Pfam Phospholipase D C terminal 963 1033 IPR024632 -
Apr10g1413 1043 Pfam C2 domain 228 354 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1413 Apr-Chr10 26379068 26386812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1413 39 1043 Phospholipase D Gene Family (Wang group) AT2G42010 68.679 0.0 1444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1413 K01115 - gmx:100805294 1677.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1413 10 26379068 26386812 Apr10g1413 10 26379068 26386812 ECH