Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1407 ATGGATATAAGGGTCGCGAAAAGGACGGAGCAATTCGGTGGGACGACGTGTGTGTATTGGCAAGCTGGTAAATGCAACAGAAATCCATGCAGATTTTTGCACGGAGAATCACCACTGCCATCTACTCCTTATCACGATGCCAGAAGGCCCAATACTGCTTATCGTTATTCAAGGAGGCTCCATCTGTCTGAGAACACCTCCAAGAGTAACTCAAAGACAGTATTGATTAGAAAGAGTGCAGATAAAGAAGATGGGACAAGTGTTGCCAAGAGTTCTCAGAAGCCATCACCAATTATATGTAAATATTGGACAAATGGCAATTGTGTACATGGTGAACGGTGCCGGAATTTACATTCATGGTTTTATGGTGATGGGTTTTCCACTTTGGCAAAGCTTGAAGGCCACAAGAAGGTCATCACTGGGATTGCCCTTCCAGTTGGGTCTGACAAGCTTTATTCCGGCAGCACTGATGGGACAGTTCGTATATGGGACTGCCACAATGGTCAATCTGCAAATGTGATAAATCTTGGGGCTGTAGTTAGCTCTTTGATCAGCGAGGGGCCATGGATTTTTGTTGGTGTGCGAAATGCTGTCAAGGCTTGGAATATTCAGACTGCTTCAGAATTTACTCTTGATGGACCTAAAGGACAAGTCCTTGCCATGGTTGTTGGCAATGATACACTTTTTGCTGCAGCAGAGAATGGTGTAATTTCTGCATGGAGAGGCAGCTCTAGCTCTGAAGCCACGACCCCTTTTGAACCAGTTGCTTCACTCACTGGCCACACTAAAGCTGTTGTTTGCCTGGTTGTTGGAGGCAAAACGCTGTTCTCAGGGTCCAAGGACCAAAGTATAAAGGTTTGGGACCTTGATACATTACAGTGTAAGATGACACTTAATGAGCATACTGACATGGTCACATCCCTTATTTGTTGGGACCATTATTTGTTATCAAGTTCATCTGACTGCACAATTAAAGTCTGGGTTGCCACTGAAGAGGGAACTTTGAAGGTGACATATACGCACCGAGAGGAAAATGGTGTTGTTTCACTTTTTGGGATGACTAATGCAGAAGAGAAGCCAATATTATTTGTCTCATGTAGAGACAATTCAGTTCGCATGTATGAATTGCCATCATTTTCAGAGAGAGGTCGTTTGTTTGCAAAGCGAGAGCTTCGATCTATGGAGTTAGGTCCTGGTGGTCTCTTCTTCACTGGGGACGGTACTGGTTTGCTGATGGTTTGGAAATGGTGGGAAGAACCCAAGATGGCTTCCTCTTAA 1278 0.4452 MDIRVAKRTEQFGGTTCVYWQAGKCNRNPCRFLHGESPLPSTPYHDARRPNTAYRYSRRLHLSENTSKSNSKTVLIRKSADKEDGTSVAKSSQKPSPIICKYWTNGNCVHGERCRNLHSWFYGDGFSTLAKLEGHKKVITGIALPVGSDKLYSGSTDGTVRIWDCHNGQSANVINLGAVVSSLISEGPWIFVGVRNAVKAWNIQTASEFTLDGPKGQVLAMVVGNDTLFAAAENGVISAWRGSSSSEATTPFEPVASLTGHTKAVVCLVVGGKTLFSGSKDQSIKVWDLDTLQCKMTLNEHTDMVTSLICWDHYLLSSSSDCTIKVWVATEEGTLKVTYTHREENGVVSLFGMTNAEEKPILFVSCRDNSVRMYELPSFSERGRLFAKRELRSMELGPGGLFFTGDGTGLLMVWKWWEEPKMASS* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1407 425 MobiDBLite consensus disorder prediction 64 93 - -
Apr10g1407 425 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 7 424 - -
Apr10g1407 425 Pfam WD domain, G-beta repeat 253 288 IPR001680 GO:0005515
Apr10g1407 425 Pfam WD domain, G-beta repeat 293 327 IPR001680 GO:0005515
Apr10g1407 425 Pfam WD domain, G-beta repeat 128 164 IPR001680 GO:0005515
Apr10g1407 425 SUPERFAMILY WD40 repeat-like 96 415 IPR036322 GO:0005515
Apr10g1407 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 297 IPR001680 GO:0005515
Apr10g1407 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 291 - -
Apr10g1407 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 173 IPR001680 GO:0005515
Apr10g1407 425 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Apr10g1407 425 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
Apr10g1407 425 PRINTS G protein beta WD-40 repeat signature 315 329 IPR020472 -
Apr10g1407 425 Gene3D - 13 118 - -
Apr10g1407 425 Gene3D - 119 182 IPR015943 GO:0005515
Apr10g1407 425 PANTHER - 7 424 IPR044715 -
Apr10g1407 425 SMART c3hfinal6 94 120 IPR000571 GO:0046872
Apr10g1407 425 SMART c3hfinal6 11 36 IPR000571 GO:0046872
Apr10g1407 425 ProSiteProfiles Zinc finger C3H1-type profile. 94 121 IPR000571 GO:0046872
Apr10g1407 425 Gene3D - 183 423 IPR015943 GO:0005515
Apr10g1407 425 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Apr10g1407 425 ProSitePatterns Trp-Asp (WD) repeats signature. 275 289 IPR019775 -
Apr10g1407 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 164 - -
Apr10g1407 425 SMART WD40_4 378 415 IPR001680 GO:0005515
Apr10g1407 425 SMART WD40_4 125 164 IPR001680 GO:0005515
Apr10g1407 425 SMART WD40_4 291 328 IPR001680 GO:0005515
Apr10g1407 425 SMART WD40_4 332 375 IPR001680 GO:0005515
Apr10g1407 425 SMART WD40_4 251 288 IPR001680 GO:0005515
Apr10g1407 425 SMART WD40_4 204 241 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1407 Apr-Chr10 26338652 26340589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1407 88 356 Eukaryotic Initiation Factors Gene Family AT2G46290 23.746 4.98e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr10g1407 WD40 3.8e-06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1407 - - aprc:113849178 823.157